Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1927 ATGGCTGACGGTCAGCTCTACAACAACATCTCTCTCGGCGGCCGTGGAGGCACTAACCCTGGCCAGCTTAAAACAGATCAAAGAGGTATTCAGTGGAAGAAGCAAGGAGGTGGCAAGGCAGTTGAGGTGGATAAAACAGACATTGTTGGTGTAACGTGGATGAAGGTCCCCAGGTCCAACCAGTTGGGAATTCGGGTCAAAGATGGGTTGTATTACAAGTTCATTGGGTTCCGCGACCAGGACATCAGCAGTTTAACCAAATTTTTCCAGAGTAATTGTGGAATAGCACCAGAGGAAAAGCAGCTTTCTGTCAGTGGTCGTAATTGGGGTGAAGTTGATCTGAATGGGAATATGCTTACTTTCTTGGTTGGTTCGAAGCAAGCATTTGAAGTGTCTCTAGCTGATGTAGCCCAAACACAACTTCAAGGGAAGAATGATGTTATGTTGGAGTTCCATGTAGATGATACAACAGGAGCTAATGAGAAAGATTCTCTAATGGAGATAAGTTTTCACATACCAAATACCAATACTCAATTTGTTGGTGATGAAAGTCGCCCTCCTGCTCAGGTTTTCCGTGATAAAATTATGTCTATGGCGGATGTTAGTGCGGGCATTGAGGAAGCTGTGGTCACATTTGAGGGTATTGCTATCCTCACTCCAAGGGGTCGGTACAGTGTAGAACTCCACCTTTCTTTCCTGCGCCTCCAAGGACAAGCCAATGACTTTAAAATACAATACAGCAGCGTTGTTCGCCTTTTCTTACTTCCAAAGTCCAATCAGCCACATACTTTCGTTGTTGTAACTTTAGATCCACCAATTCGTAAAGGCCAAACTTTATACCCTCATATTGTTCTGCAGTTTGAGACTGACTATGTGGTTCAAAGCTCCTTGCAAATAGGCGATGAACTTCTCAACACAAAGTACAAGGACAAGTTAGAGCCTTCTTATAAGGGGCTTATACATGAGGTGTTTACCACCATATTGCGCGGTTTATCTGGTGCAAAAATTACCAGACCTGGAAAATTCCGCAGCTGTCAAGATGGTTATGCTGTCAAGTCATCTTTGAAAGCTGAAGATGGTGTCTTATATCCACTTGAAAAAAGTTTCTTCTTTCTTCCTAAGCCTCCTACCCTTATTCTTCATGAGGAGATTGACTATGTTGAATTTGAGAGGCATGCTGCTGGTGGGTCAAATATGCATTACTTTGATCTCCTCATTAGACTGAAAACTGAACAAGAACATCTCTTTAGAAATATCCAGAGGAATGAATACCATAATCTTTTCGACTTTATCAGTGGGAAGGGTTTGAAGATCATGAACTTGGGAGATGCTCAGGCTAGAGATGGCGTGGCAGCTGTTCTCCAAGAGGATGATGATGATGCTGTTGACCCGCATCTTGAGCGCATTAGAAATGAAGCTGGTGGAGATGAGAGTGATGAAGAGGATTCAGATTTTGTTGCTGACAAGGATGATGGGGGTTCTCCAACTGATGATTCAGGTGGAGATGACTCTGACGGGAGTGCAAGTGGAGGTGAAAAAGAGAAGCCTGGAAAAAAGGATGCCAAAAAGGACCCTTCGGCTTCCAAGGCACCTGCCAAGAAGAAATCTAGAGAAGGGGGTGATGATGGTTCAAAGAAGAAAAAGCAGAAAAAGAAAAAGGATCCAAATGCACCAAAGAGGGCAATATCTGGTTTCATGTTCTTCTCTAAGATGGAAAGAGAGAACATAAAGAAAAGTAATCCTGGAATTTCTTTCACGGAGTTAGGGCGAGTACTTGGAGACAAGTGGAATAAGATGTCGGCGGAAGAGAAAGAACCGTATGAATCAAAGGCTCGGGATGACAAAAAACGATACAAGGAAGAGATCAGTGGCTATAAGAATCCACAGCCAATGAACGTAGACTCTGGGAATGAATCTGACAGTGCATAG 1929 43.39 MADGQLYNNISLGGRGGTNPGQLKTDQRGIQWKKQGGGKAVEVDKTDIVGVTWMKVPRSNQLGIRVKDGLYYKFIGFRDQDISSLTKFFQSNCGIAPEEKQLSVSGRNWGEVDLNGNMLTFLVGSKQAFEVSLADVAQTQLQGKNDVMLEFHVDDTTGANEKDSLMEISFHIPNTNTQFVGDESRPPAQVFRDKIMSMADVSAGIEEAVVTFEGIAILTPRGRYSVELHLSFLRLQGQANDFKIQYSSVVRLFLLPKSNQPHTFVVVTLDPPIRKGQTLYPHIVLQFETDYVVQSSLQIGDELLNTKYKDKLEPSYKGLIHEVFTTILRGLSGAKITRPGKFRSCQDGYAVKSSLKAEDGVLYPLEKSFFFLPKPPTLILHEEIDYVEFERHAAGGSNMHYFDLLIRLKTEQEHLFRNIQRNEYHNLFDFISGKGLKIMNLGDAQARDGVAAVLQEDDDDAVDPHLERIRNEAGGDESDEEDSDFVADKDDGGSPTDDSGGDDSDGSASGGEKEKPGKKDAKKDPSASKAPAKKKSREGGDDGSKKKKQKKKKDPNAPKRAISGFMFFSKMERENIKKSNPGISFTELGRVLGDKWNKMSAEEKEPYESKARDDKKRYKEEISGYKNPQPMNVDSGNESDSA 642
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8854961 8862061 + PI0024573.1 Cmetu04g1927 354371

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1927 642 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 558 626 IPR009071 -
Cmetu04g1927 642 PANTHER FACT COMPLEX SUBUNIT SSRP1 5 611 - -
Cmetu04g1927 642 FunFam FACT complex subunit SSRP1 96 179 - -
Cmetu04g1927 642 FunFam FACT complex subunit SSRP1 542 635 - -
Cmetu04g1927 642 MobiDBLite consensus disorder prediction 596 623 - -
Cmetu04g1927 642 FunFam Fact complex subunit ssrp1 199 338 - -
Cmetu04g1927 642 SUPERFAMILY HMG-box 544 627 IPR036910 -
Cmetu04g1927 642 MobiDBLite consensus disorder prediction 470 642 - -
Cmetu04g1927 642 Gene3D - 199 338 - -
Cmetu04g1927 642 Gene3D - 97 179 IPR038167 -
Cmetu04g1927 642 SMART hmgende2 557 627 IPR009071 -
Cmetu04g1927 642 Pfam POB3-like N-terminal PH domain 7 98 IPR035417 -
Cmetu04g1927 642 Gene3D High mobility group box domain 542 636 IPR036910 -
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 219 235 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 264 280 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 329 342 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 356 374 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 400 416 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 374 391 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 241 257 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 PRINTS Structure-specific recognition protein signature 416 434 IPR000969 GO:0003677|GO:0005634
Cmetu04g1927 642 MobiDBLite consensus disorder prediction 628 642 - -
Cmetu04g1927 642 Pfam HMG (high mobility group) box 558 626 IPR009071 -
Cmetu04g1927 642 CDD HMG-box_AtSSRP1 554 629 - -
Cmetu04g1927 642 MobiDBLite consensus disorder prediction 507 548 - -
Cmetu04g1927 642 SUPERFAMILY PH domain-like 206 440 - -
Cmetu04g1927 642 SMART Rtt106_2 348 441 IPR013719 -
Cmetu04g1927 642 Pfam Histone chaperone Rttp106-like 350 439 IPR013719 -
Cmetu04g1927 642 Gene3D - 339 448 IPR011993 -
Cmetu04g1927 642 CDD PH2_SSRP1-like 342 441 - -
Cmetu04g1927 642 Gene3D - 1 93 IPR011993 -
Cmetu04g1927 642 FunFam FACT complex subunit SSRP1 339 448 - -
Cmetu04g1927 642 FunFam FACT complex subunit SSRP1 1 93 - -
Cmetu04g1927 642 Pfam Structure-specific recognition protein (SSRP1) 106 175 IPR024954 -
Cmetu04g1927 642 CDD PH1_SSRP1-like 207 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1927 K09272 - - csv:101222581 1146.34
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g902 Blo01g00329 . . Bda08g00034 Bpe04g01069 . Bma04g01053 Bma05g01290 Cmo08g00997 . . . . . . . . . . . . . . . Cla06g00753 Cam06g0805 Cec06g0816 . Clacu06g0808 Cmu06g0781 Cre06g1559 . . Cone7ag0393 . . . Chy05g00556 . . . . . Bpe05g01140 . . . Sed09g0187 . . Cma08g01025 . Car08g00902 . . Cpe17g00251 Bhi12g01502 Tan06g2304 Cmetu04g1927 Lac12g2048 Hepe03g0356 . Lcy13g0460 . . . . . . . Lsi09g01146 . . Cme05g00713
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006961 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 2 1 2 1 1 1 1 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7787 PF17292 POB3_N 9.40E-22 CL0266 Cmetu TR