Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g1972 ATGTTTCAACAACAGAGTGCCCATAATTCAAGCTTTATTCAGAAGAACTCATTAGTTCGTGATCAGCATATACCTTCTGATGCCTGCTCGATGGACCCCACAAATGGAAATAATGCTACCAGCAACAACCCAAATTTGGCCTCAAAGCAGAGACTGCGATGGACACATGATCTTCACGAACGATTTGTTAATGCAGTCGCACAACTTGGTGGTCCAGATCGTGCTACACCCAAAGGCGTCCTTAGAGTTATGGGTGTTCAAGGTTTAACAATATACCACGTCAAAAGCCACCTACAGAAATATCGGCTTGCAAAATACCTTCCCGACTCCTCGTCTGATGGAAAAAAGACCGACAAGAAGGATTCTAGTGACATTCTATCAAACATTGATGGCTCGTCGGGAATGCAAATTACAGAAGCGCTTAAGCTGCAGATGGAGGTCCAGAAGCGACTGCATGAACAATTGGAGGTACAGAGACAGCTACAGTTACGGATTGAAGCCCAAGGCAAGTACTTGAAGAAGATAATCGAAGAGCAACAAAAACTTAGTGGGGTTCTTTCAGGAGCTCCAGCTGCCTCTGCCTTTACAGCTCCTGCTTCTGGTGATAACTGCCCAGAAGCTGATAAAAACGACCCACCAACACCGGCGCCAACATCCGAGTTTCCTCGCCAAGAGAAAGTATCAAAGGAACGGGCCCAAGGCAAGAGTGTCTCTATTGATGATTCTTTCTCGTCTCATCACGAACCATTGACGCCTGATTCTGGTTGCCATAGCTCCCCAAGTGAGAGTCCAAGGCCAGTGAAGAAGCAAAGACAGTACATGGATGGTGCATTTGCCAAATCAGAGATGATACTCGCACATCAGATACTGGAGTCTAGTTTAAACTCCACTCACAAGGAATGA 903 45.96 MFQQQSAHNSSFIQKNSLVRDQHIPSDACSMDPTNGNNATSNNPNLASKQRLRWTHDLHERFVNAVAQLGGPDRATPKGVLRVMGVQGLTIYHVKSHLQKYRLAKYLPDSSSDGKKTDKKDSSDILSNIDGSSGMQITEALKLQMEVQKRLHEQLEVQRQLQLRIEAQGKYLKKIIEEQQKLSGVLSGAPAASAFTAPASGDNCPEADKNDPPTPAPTSEFPRQEKVSKERAQGKSVSIDDSFSSHHEPLTPDSGCHSSPSESPRPVKKQRQYMDGAFAKSEMILAHQILESSLNSTHKE 300
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3259513 3263462 + PI0016259.1 Cmetu04g1972 354416

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g1972 300 MobiDBLite consensus disorder prediction 109 125 - -
Cmetu04g1972 300 MobiDBLite consensus disorder prediction 108 131 - -
Cmetu04g1972 300 FunFam Myb family transcription factor 48 106 - -
Cmetu04g1972 300 MobiDBLite consensus disorder prediction 196 275 - -
Cmetu04g1972 300 SUPERFAMILY Homeodomain-like 48 103 IPR009057 -
Cmetu04g1972 300 NCBIfam myb-like DNA-binding domain, SHAQKYF class 49 104 IPR006447 GO:0003677
Cmetu04g1972 300 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 32 295 IPR044848 GO:0003700
Cmetu04g1972 300 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 46 106 IPR017930 -
Cmetu04g1972 300 MobiDBLite consensus disorder prediction 237 266 - -
Cmetu04g1972 300 Pfam Myb-like DNA-binding domain 52 102 IPR001005 -
Cmetu04g1972 300 MobiDBLite consensus disorder prediction 24 46 - -
Cmetu04g1972 300 Gene3D - 48 107 - -
Cmetu04g1972 300 Pfam MYB-CC type transfactor, LHEQLE motif 135 181 IPR025756 -
Cmetu04g1972 300 Coils Coil 138 158 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g1972 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0426 Cmetu-Chr4:6984950 Cmetu04g1972 Cmetu-Chr4:3259513 1.10E-40 dispersed
Cmetu04g1868 Cmetu-Chr4:21223118 Cmetu04g1972 Cmetu-Chr4:3259513 1.00E-28 dispersed
Cmetu04g1972 Cmetu-Chr4:3259513 Cmetu06g0187 Cmetu-Chr6:2607479 3.50E-27 dispersed
Cmetu04g0438 Cmetu-Chr4:3252095 Cmetu04g1972 Cmetu-Chr4:3259513 1.40E-21 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008809 1 2 1 0 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 0 33
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7794 PF00249 Myb_DNA-binding 1.00E-07 CL0123 Cmetu TF