Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2000 ATGTTTAATTCCTTCTTCTTCTTCTTCTTCTTCTTCATTCTGTTTTTTCAATGTAAATCTTCTGAAATTCCTCGTAGATTGCTTCACCAACCATTTTTCCCACTTGATTCTGTTCCTCCGGCGGAGCCACCGTCCACTCCGATACCCCCACCCCCCAATCCCAAATACCCATTTTCCACTACCCCACCTACTAATCCTGATGGCTCTCCATTTTTTCCTACTTATCCCGGAACCCCACCGCCTCCGGCACCGGCGAGTTTTGCATCCTTTCCGGCTAATATCTCTTCTTTGATTTTACCTCATTCGTCTCAGTCTGGTTCAAGTTCCAAGAAGGTTGTTCCTTTGGTTATTGCTGGGGTTGTTTCTGCTGTTTTGGTTGTCTGCATTGTTGGGTTTTTGTACAGGCGGAGACGGCGTGGTCGTGGGTTGAGCGATGACAAGACGTACAGATCGGAAAATAGTAGCCGGTTGTGTCCGGTTACGAATGTTGAAGTCGGTAATGGAATACCTAAGTTGAGACATCCCTCTGCTACTAGCTCTGAGTTTCTGTATTTGGGTACTCTTGTGAACTCGAGAGCGATCGATGAGCGTTCTGTTGGAGGAGCTCGTGTTGCTGATCCTAGACCGTTGGATTCGCCGGAGCTTCATCCGCTTCCGCCGTTGAATTTTGGTCGGTCGAGTGAGAAGCAAAATGGTGGAAATGGAGAGGAGAGGTCGATGGGAGATGAGGAGGAAGAAGAATTTTACTCTCCTAAAGGTTCTCTCGGCGCAATTGGCTCGGGATCTCGAAGAGTTCTCGCAACAATGGCGGCTGAAGATTTGCTTGGTAAAACCAGCGATTCGAGTACAACTTCGTATTCCACATCCAGCGGTTCCGTTTCGCCGGCAAGATCACGTTCTAAGAGTCTCTCTTTATCTCCACCGGCGAGCTTGAGCCCTAGAAGATCCGTTCAAAATGAATCTTCTAATTTCTCTGTTTCTGCTACTGTTGCGACGGAGCAGCATTCGCCACCATTAACGCCGCCGCTTTCTCACGGCGGAGTGGAATCAGACGATGGCGTTAAATCCCATTGCCCATCTCCAATGCGTTTATCGACGGACAAAGTTCCGGAGAAGAATTCCACCGCATCTTCATCCCGGAGATATTCTAATGTTTCTATTCACAGTGTGATGTTCCCAATTTTAACAACCGATAAGGATTTGGTTAATCATGCTGATACGAACAATAGTCACGAAGAATCTCCAAGACAATCCGATAATTCAGATCCCGACGAGCCATTCCCCTTTTCTCCTTGTTTATTTCCTCTTTCAGATGGAGTTTTAGGGCAAATTCAGATTCAATTGCCTACAGTTTCAAACATTCCCGATTCGGATTCTGATGCGAAACTTAAGCAACTTCCTTACTCGTTTACTTCATCTTCACCTACATCCTCACCGGAGAGAGTTGTTATGGACTCATCTCCGTCAAGAGCATCCGTTATTTCAGATCAAAACAGGTCCTCTCCACCATCACCAGAGAGAATTGTGTTGACTGATTCAGATTCATCGAAGAAAACTGTAGACCATTTTGATGATGTGGAACCTTCTTCTCCTAACATCAATACCACTGATTTGGGTCGTCTGCAATTGCCTTCGGGTTCATCCGCGGCTCCTCCACCACCTCCACCGCCTCCGCCTCCGCCTCCACCACCTCCACCGCCTCCGCCACTGGTAGCTCCTCTGCCAGAACGCTGGGACATGCCCATTTCTCCTTCAACACCAATGGACCAATCCATTCCAAAGGCACCTCCTCCATTAATGCCTCCATTAAGGCCATTTATAATGGAGAATGTGAATAATGTGTCACCAATTCAGTTGTCATCCTACAAAAGCAACGGTGAATCCTCTGAAGACACCCCTAAGCCCAAGTTGAAGCCATTGCATTGGGACAAAGTAAGGGCCAGTTCTGATCGTGAGATGGTGTGGGACCAACTTAGATCAAGCTCTTTCAAAGTGAATGAGGAAATGATTGAAACCTTGTTTATTGTGAACACTTCCAACTCAAAGGAGACAACTCCACGCACTGTTCTTCCTCCACCTAACCAAGAGATTGGAGTTCTCGATCCCAAAAAGTCCCAGAACATTGCAATTGCATTACGGGCGCTTAATGTGACCATAGAAGAAGTTTGTGATGCCCTTTTAGAAGGTAATGCAGAAGCACTTGGAGCAGAGCTACTTGAAAGTTTATTGAAGATGGCTCCAACAAAAGAAGAAGAACGTAAATTAAAGGCATCCAAGGATGTCTCGCCTACAAAATTCGGCCCTGCTGAGAAATTTTTGAAGGCAGTCCTTGATGTTCCTTTTGCATTTAAAAGGGTGGATGCAATGCTTTACATTGCAAATTTCGAGTCCGAGATTGAGTACCTAAAAAAATCATTCGAAAATCTCGAGACTGCTTGCGAGGAATTGAGGAATAGCAGGATGTTCTTGAAACTTTGGAAGCTGTGCTCAAGACTGGGAATCGCATGA 2508 46.09 MFNSFFFFFFFFILFFQCKSSEIPRRLLHQPFFPLDSVPPAEPPSTPIPPPPNPKYPFSTTPPTNPDGSPFFPTYPGTPPPPAPASFASFPANISSLILPHSSQSGSSSKKVVPLVIAGVVSAVLVVCIVGFLYRRRRRGRGLSDDKTYRSENSSRLCPVTNVEVGNGIPKLRHPSATSSEFLYLGTLVNSRAIDERSVGGARVADPRPLDSPELHPLPPLNFGRSSEKQNGGNGEERSMGDEEEEEFYSPKGSLGAIGSGSRRVLATMAAEDLLGKTSDSSTTSYSTSSGSVSPARSRSKSLSLSPPASLSPRRSVQNESSNFSVSATVATEQHSPPLTPPLSHGGVESDDGVKSHCPSPMRLSTDKVPEKNSTASSSRRYSNVSIHSVMFPILTTDKDLVNHADTNNSHEESPRQSDNSDPDEPFPFSPCLFPLSDGVLGQIQIQLPTVSNIPDSDSDAKLKQLPYSFTSSSPTSSPERVVMDSSPSRASVISDQNRSSPPSPERIVLTDSDSSKKTVDHFDDVEPSSPNINTTDLGRLQLPSGSSAAPPPPPPPPPPPPPPPPPPPLVAPLPERWDMPISPSTPMDQSIPKAPPPLMPPLRPFIMENVNNVSPIQLSSYKSNGESSEDTPKPKLKPLHWDKVRASSDREMVWDQLRSSSFKVNEEMIETLFIVNTSNSKETTPRTVLPPPNQEIGVLDPKKSQNIAIALRALNVTIEEVCDALLEGNAEALGAELLESLLKMAPTKEEERKLKASKDVSPTKFGPAEKFLKAVLDVPFAFKRVDAMLYIANFESEIEYLKKSFENLETACEELRNSRMFLKLWKLCSRLGIA 835
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16988094 16992917 + PI0000362.1 Cmetu04g2000 354444

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 547 575 - -
Cmetu04g2000 835 Coils Coil 792 819 - -
Cmetu04g2000 835 SUPERFAMILY Formin homology 2 domain (FH2 domain) 559 827 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 511 525 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 404 420 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 40 72 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 277 382 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 619 638 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 197 260 - -
Cmetu04g2000 835 Gene3D Formin, FH2 domain 624 834 IPR042201 -
Cmetu04g2000 835 Pfam Formin Homology 2 Domain 629 833 IPR015425 -
Cmetu04g2000 835 PANTHER FORMIN-RELATED 6 827 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 528 543 - -
Cmetu04g2000 835 SMART it6_source 627 834 IPR015425 -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 404 432 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 367 382 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 468 601 - -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 468 510 - -
Cmetu04g2000 835 ProSiteProfiles Formin homology-2 (FH2) domain profile. 627 835 IPR015425 -
Cmetu04g2000 835 MobiDBLite consensus disorder prediction 277 339 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2000 K28090 - - csv:101211678 1311.59
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2000 Cmetu-Chr4:16988094 Cmetu11g1138 Cmetu-Chr11:28793854 7.60E-48 dispersed
Cmetu04g2000 Cmetu-Chr4:16988094 Cmetu10g1209 Cmetu-Chr10:10688581 7.30E-75 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1209 . 465 941 FH2 protein (formin) Gene Family AT3G25500 65.8 1.1e-163 574.7
Cmetu11g1138 . 413 838 FH2 protein (formin) Gene Family AT3G25500 53.9 3.5e-122 436.8
Cmetu02g0328 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.5 6.8e-102 369.4
Cmetu04g2000 . 624 833 FH2 protein (formin) Gene Family AT2G43800 64.8 3.0e-66 250.8
Cmetu11g1515 . 320 621 FH2 protein (formin) Gene Family AT4G15200 56.5 2.0e-53 207.2
Cmetu11g1515 . 475 938 FH2 protein (formin) Gene Family AT5G54650 63.9 2.5e-161 566.6
Cmetu11g1138 . 33 857 FH2 protein (formin) Gene Family AT5G67470 53.9 1.1e-212 737.3
Cmetu10g1209 . 503 937 FH2 protein (formin) Gene Family AT5G67470 61.0 3.1e-127 453.4
Cmetu02g0328 . 500 895 FH2 protein (formin) Gene Family AT5G67470 51.1 5.6e-105 379.4
Cmetu04g2000 . 611 825 FH2 protein (formin) Gene Family AT5G67470 61.5 5.7e-65 246.5
Cmetu10g0982 . 338 830 FH2 protein (formin) Gene Family AT1G59910 51.4 6.6e-125 445.7
Cmetu04g2000 . 651 833 FH2 protein (formin) Gene Family AT5G48360 54.1 1.3e-46 185.3
Cmetu04g2000 . 623 825 FH2 protein (formin) Gene Family AT3G07540 50.2 7.7e-48 189.5
Cmetu04g2809 . 942 1253 FH2 protein (formin) Gene Family AT1G42980 51.4 7.4e-70 261.2
Cmetu04g2809 . 1 1260 FH2 protein (formin) Gene Family AT1G31810 68.4 0.0e+00 1203.7
Cmetu02g1238 . 915 1222 FH2 protein (formin) Gene Family AT5G07650 70.8 8.1e-116 415.2
Cmetu07g0822 . 1067 1389 FH2 protein (formin) Gene Family AT5G07650 64.7 3.5e-111 399.8
Cmetu04g2809 . 926 1257 FH2 protein (formin) Gene Family AT5G07650 59.9 1.3e-108 391.3
Cmetu02g1753 . 919 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 2.4e-104 377.1
Cmetu12g0477 . 984 1241 FH2 protein (formin) Gene Family AT5G07650 71.7 1.6e-100 364.4
Cmetu02g1238 . 842 1215 FH2 protein (formin) Gene Family AT5G07770 65.3 4.9e-126 448.7
Cmetu07g0822 . 992 1381 FH2 protein (formin) Gene Family AT5G07770 59.3 6.9e-120 428.3
Cmetu04g2809 . 862 1251 FH2 protein (formin) Gene Family AT5G07770 56.0 2.1e-116 416.8
Cmetu02g1753 . 842 1223 FH2 protein (formin) Gene Family AT5G07770 56.7 4.0e-112 402.5
Cmetu12g0477 . 907 1245 FH2 protein (formin) Gene Family AT5G07770 63.5 7.6e-111 398.3
Cmetu07g0822 . 966 1392 FH2 protein (formin) Gene Family AT3G32400 73.1 8.0e-170 594.0
Cmetu02g1753 . 849 1232 FH2 protein (formin) Gene Family AT3G32400 67.7 1.4e-142 503.4
Cmetu04g2809 . 862 1256 FH2 protein (formin) Gene Family AT3G32400 66.0 1.6e-141 500.0
Cmetu02g1238 . 842 1222 FH2 protein (formin) Gene Family AT3G32400 64.0 7.3e-131 464.5
Cmetu12g0477 . 877 1241 FH2 protein (formin) Gene Family AT3G32400 57.1 1.9e-110 396.7
Cmetu07g0822 . 1 1392 FH2 protein (formin) Gene Family AT2G25050 52.3 0.0e+00 1171.0
Cmetu02g1238 . 843 1222 FH2 protein (formin) Gene Family AT5G07780 60.0 3.0e-110 396.0
Cmetu07g0822 . 993 1382 FH2 protein (formin) Gene Family AT5G07780 54.6 5.8e-106 381.7
Cmetu04g2809 . 863 1252 FH2 protein (formin) Gene Family AT5G07780 52.7 4.6e-103 372.1
Cmetu12g0477 . 908 1240 FH2 protein (formin) Gene Family AT5G07780 57.3 9.0e-99 357.8
Cmetu02g1753 . 849 1223 FH2 protein (formin) Gene Family AT5G07780 52.8 2.5e-96 349.7
Cmetu02g1238 . 914 1229 FH2 protein (formin) Gene Family AT5G07760 70.2 3.7e-114 409.8
Cmetu07g0822 . 1066 1389 FH2 protein (formin) Gene Family AT5G07760 66.2 2.3e-111 400.6
Cmetu04g2809 . 936 1257 FH2 protein (formin) Gene Family AT5G07760 61.3 9.8e-107 385.2
Cmetu02g1753 . 918 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 3.2e-105 380.2
Cmetu12g0477 . 983 1241 FH2 protein (formin) Gene Family AT5G07760 72.2 1.4e-100 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010763 0 1 0 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 0 32