Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2143 ATGCTAGCCATTGCCTCATTCTCCTCTCTTCATTTGCCGTTAAATCCATCCAACTCAACGAACGTATTTTCTTGTTCGCTCACTTCTCGCACGTCCACCTCCCGGCGTCGGAGAGACTCTCCTCGGAGTACTAATCTCAAGCGGTTAACCTCTCGTGTCGTCAGACTCACCCGTCGCAAGCAGCTCCACCAGGTATTTGAGGAAATTGAGATTGCCAAGAGACGTTATGGAAAGCTGAATACAATTGTTATGAATGCGGTCTTGGAAGCTTGTGTTCACTGTGGTGATATTGATTTAGCTCTGAAGACTTTTAATGAAATGTCTAAACCAGATAACTGTGGCCTTGACAATGTCAGTTATGGCACGCTATTAAAGGGTTTGGGCGAAGCTCGCAAGATTGATGAAGCATTTCAATTACTTGAATCTGTGGAAGAAGGGACTGCTATTGGAGGTCCAACATTGTCAGCACCACTTATTTATGGTCTTCTAAATGCTTTAATCGAAGCAGGAGACATGCGCCGTGCCAATGGTCTAATAGCACGATATGGGTTCTTACTTCGTGAAGGAGGCAATCTCTTGATATCAGTTTACAACTTATTGATGAAGGGGTACATAAGCTCAGGTGTTCCTCAAGCTGCTTTAGCCATGTACAATGAGATGCTAAATCTGGAGTTGAAACCTGATAGGCTCACATATAATACATTAATCTCTGCTTGTGTGAAGATTGACAAACTGGACGTGGCAATGCATTTCTTTGAGGAAATGAAGGAACGAGCTGATAAGTATGATCAGGAAGATATTTTTCCTGATGTTGTGACTTATACTACTTTACTTAAGAGTTTTGGGATTCTGAAAGATGCTCGTCTTGTTCACAAAATTGTGCTGGAAATGAAGTCTTGTCATGGTTTGTCGATTGATCGAACTGCATACACCGCAATGATTGATGCTTTGGTTAACTGTGGCTCTATTAATGGTGCTCTTTCTTTATTTGGGGAATTATTGAAGCTTTCTGGATGGAATTTGGAGTTACGGCCAAAGCCACATCTCTATCTCACTCTTATGAGAGTTTTTTCTAGTAGAGGAGATTATAGGATGGTCAAATGTTTGCATAGACGCATGTGGCTGGACTCCTCTGGAACTATTTCTCTTGGATATCAGGAAGAAGCAGATCATCTTCTCATGGAGGCAGCTTTAAATGGCAATCAGATTGATGTGGCAATAGAGAAACTTTCAACAATTATTAAGAAATGGAAGGGAATCTCATGGGCTAGTCGAGGAGGCAGTGTTGCTCTACGTATTGAAGCATTGCTGGGACTCACCAATCTTTCTTTAGTAAATCCGGGTGCATCAATTGAGAGTGTCATGATGCCATTTAAAACCGTTCAGCCATTAAATGGAAGCTTACTGTTGAAGGAAGTGGTTATGCGTTTCTTTGACAAATCAGTTGTGCCTATCATAGACGACTGGGGTAGATGCATTGGACTACTTCACCGAGAAGACTGTACTGAGTTGGATGCTCCCCTTTGGAAAATGATGAGAAGCCCTCCTCCTGGTGTAACAACTACAGCATCGATTGGACATGTTGCGAATCTTATTCTGCAAAAGAGGTACAAAATGGTTATTGTTGTAAGACATAGCAAGTTTAGTACATATTATGGCTCGAGTTTGAGGGCTGTCGGTGTTTTTACTATTGAGCAATTGTATGGCTTTATTTCTCCCATTCCAATGCAGCATCGGCCAAACATTCCACGTAAGACGTAA 1761 41.91 MLAIASFSSLHLPLNPSNSTNVFSCSLTSRTSTSRRRRDSPRSTNLKRLTSRVVRLTRRKQLHQVFEEIEIAKRRYGKLNTIVMNAVLEACVHCGDIDLALKTFNEMSKPDNCGLDNVSYGTLLKGLGEARKIDEAFQLLESVEEGTAIGGPTLSAPLIYGLLNALIEAGDMRRANGLIARYGFLLREGGNLLISVYNLLMKGYISSGVPQAALAMYNEMLNLELKPDRLTYNTLISACVKIDKLDVAMHFFEEMKERADKYDQEDIFPDVVTYTTLLKSFGILKDARLVHKIVLEMKSCHGLSIDRTAYTAMIDALVNCGSINGALSLFGELLKLSGWNLELRPKPHLYLTLMRVFSSRGDYRMVKCLHRRMWLDSSGTISLGYQEEADHLLMEAALNGNQIDVAIEKLSTIIKKWKGISWASRGGSVALRIEALLGLTNLSLVNPGASIESVMMPFKTVQPLNGSLLLKEVVMRFFDKSVVPIIDDWGRCIGLLHREDCTELDAPLWKMMRSPPPGVTTTASIGHVANLILQKRYKMVIVVRHSKFSTYYGSSLRAVGVFTIEQLYGFISPIPMQHRPNIPRKT 586
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30685217 30691626 - PI0006747.1 Cmetu04g2143 354587

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2143 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 228 258 IPR002885 -
Cmetu04g2143 586 PANTHER OS09G0431600 PROTEIN 28 575 IPR044781 -
Cmetu04g2143 586 Gene3D Tetratricopeptide repeat domain 32 147 IPR011990 GO:0005515
Cmetu04g2143 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 306 341 IPR002885 -
Cmetu04g2143 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 116 146 IPR002885 -
Cmetu04g2143 586 SUPERFAMILY CBS-domain pair 449 569 IPR046342 -
Cmetu04g2143 586 Gene3D Tetratricopeptide repeat domain 152 283 IPR011990 GO:0005515
Cmetu04g2143 586 Gene3D Tetratricopeptide repeat domain 284 400 IPR011990 GO:0005515
Cmetu04g2143 586 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 193 227 IPR002885 -
Cmetu04g2143 586 Pfam PPR repeat family 195 241 IPR002885 -
Cmetu04g2143 586 Pfam PPR repeat family 80 127 IPR002885 -
Cmetu04g2143 586 Pfam Pentatricopeptide repeat domain 260 299 IPR002885 -
Cmetu04g2143 586 Pfam PPR repeat 309 335 IPR002885 -
Cmetu04g2143 586 NCBIfam pentatricopeptide repeat 118 142 IPR002885 -
Cmetu04g2143 586 NCBIfam pentatricopeptide repeat 196 228 IPR002885 -
Cmetu04g2143 586 NCBIfam pentatricopeptide repeat 309 335 IPR002885 -
Cmetu04g2143 586 NCBIfam pentatricopeptide repeat 84 108 IPR002885 -
Cmetu04g2143 586 NCBIfam pentatricopeptide repeat 231 258 IPR002885 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2143 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2143 Cmetu-Chr4:30685217 Cmetu06g1732 Cmetu-Chr6:4017669 4.90E-09 dispersed
Cmetu04g2143 Cmetu-Chr4:30685217 Cmetu02g0975 Cmetu-Chr2:14067939 1.70E-06 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g198 . . . . . . . . . . . . Car09g00456 . . . Cpe06g00392 . . . . . . . Cla05g01804 Cam05g1926 Cec05g1938 Cco05g2001 Clacu05g1918 Cmu05g1800 Cre05g1926 Cone4ag1857 Cone7ag1764 . . Lsi04g02196 Csa03g04406 . . . . . . . . . . Sed13g2091 . Cmo09g00518 . . . . . . Bhi09g02372 Tan01g3737 Cmetu04g2143 . Hepe01g2090 Mch11g0628 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013021 0 2 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 28