Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2170 ATGAAGCAGAGTATATCTGAAGCAGTATCTTCATCATCCACCACGGCTTCATCGGACCACTCCCAATCATCCTCCTCATCGTCGTCTTCATCGTCGACGACACCGTTGGAGAAGCCTCAATCCATATCTGCTGCAGCTGCTGCCGAGGATTTGGCCGTCGGTTCAAGAGATGGCGGCGGTGCACAAGAAACGGTTACTGTCGATCGACGAGGGGACTTCTCCGCGGTTTGTAGATGGACAGTACAAAATTTTCCAAGAATCAAGGCTAGGGCTCTATGGAGCAAGTACTTTGAGGTTGGAGGTTACGATTGTCGTTTATTGATATATCCAAAAGGGGATTCCCAAGCACTCCCTGGGTATATTTCAATCTACCTTCAAATCGTCGACCCGCGCGGCACATCCTCTTCTAAATGGGATTGCTTTGCGAGTTATCGTCTGGCTATCGTCAACGTTCTCGATGATTCGAAGACCGTTCATCGGGATTCATGGCATCGTTTTTCGAGCAAGAAGAAGTCACACGGATGGTGCGATTTTACTCCTTCTTCCACCGTGTTTGATTCTAAGCTTGGTTATTTGTTTAATAATGAGTCTATTTTGATCACTGCTGATATTCTAATTCTCAATGAGTCTGTAAACTTTACTCGGGATAACAATGAGCCAGCCTCATCTATGATGATGACATCCTCGCTTGTTGCTTGCCCTGCGCCTGAGGTGCTCAGCGGTAAGTTCACATGGAAAGTTCATAATTTTAGTTTGTTTAAAGAGATGATTAAAACACAGAAAATAATGAGTCCTGTGTTCCCGGCTGGAGAGTGTAATTTGAGGATTAGTGTCTATCAGAGCTCAGTTAATGGGACTGAGTATTTGTCAATGTGTCTAGAGAGCAAGGATACCGAAAAGACAGTAATATTACCTGATAGGAGTTGTTGGTGTTTGTTTCGGATGTCCGTGTTAAACCAGAAGCCTGCTTTAAATCACATGCATCGAGACTCATATGGGAGATTTGCAGCTGATAATAAGAGTGGGGACAATACCAGTTTGGGGTGGAATGACTATATGAAGATGTCTGATTTTGTTGGGCAAGATTCTGGTTTTTTAGTTGACGATACTGCTGTGTTTAGTACCTCCTTTCATGTGATCAAGGAGTTTAGTAATTTTTCAAAGAATGGCGGATTAATTGGAGGTAGAAATGGAAGTGGAATCAGAAAATCAGATGGTCACATGGGGAAATTCACGTGGAGGATTGAGAACTTCACAAGGCTAAAGGACCTATTGAAGAAGAGGAAGATTACAGGTCTTTGCATCAAGAGCAGGAGATTTCAGGTTGGGAACCGCGACTGTCGTCTCATTGTTTATCCTCGAGGGCAGTCTCAACCACCATGTCACCTTTCAGTCTTTCTTGAAGTTACGGATTCAAGAAATACTTCCAGTGATTGGAGTTGTTTTGTGAGTCATCGGTTGTCAGTAGTAAACCAGAAGATGGAAGAGAAATCTGTTACAAAGGAGTCTCAAAACCGGTACTCTAAAGCTGCAAAAGACTGGGGATGGCGTGAATTTGTCACACTTACCAGCCTCTTTGATCAGGATTCCGGGTTTCTGGTTCAGGATACTGTAATATTCTCAGCAGAGGTCCTTATATTAAAGGAGACATCTGTGATGCAGGATTTTATTGATCAAGACATGGAGCCATCGGGTTCCAGCTCTCTGACGGATAAGGTCGCAAAAAAAAGTTCATTTACATGGAAGGTGGAGAACTTCTTGTCCTTCAAGGAAATAATGGAGACTCGTAAAATTTTTAGTAAATTCTTTCAAGCTGGTGGATGTGAGCTCCGTATTGGTGTCTATGAGTCCTTTGACACCATTTGCATCTATCTGGAGAGTGATCAGTCTGTTGGCAGTGATCCAGATAAAAACTTTTGGGTCAGATACAAAATGGCCGTGGTGAATCAAAAGTATCCAGCAAAAACTGTGTGGAAGGAGTCTTCTATTTGTACAAAGACATGGAATAATTCTGTTTTGCAATTCATGAAGGTATCAGATATGCTAGAGGCAGAAGCGGGGTTTCTTGTACGAGATACAGTTGTTTTTGTATGTGAAATATTGGATTGCTGCCCTTGGTTTGAGTTTTCAGATCTTGAGGTTTTGGCTTCAGAAGATGATCAGGATGCTTTGACTACTGATCCAGACGAACTCATTGATTCAGAAGATAGTGAAGGAATAAGTGGTGACGAGGAAGACATTTTTAGAAACCTTCTATCCACAGCTGGGTTTCATCTAACATATGGGGATAATCCTTCACAACCACAAGTCACTTTGCGAGAAAAACTTTTAATGGATGCTGGTGCAATTGCAGGCTTTCTTACTGGACTTCGTGTTTATCTTGATGATCCTGCTAAAGTTAAGCGCTTACTTCTTCCTACTAAGCTTTCTGGTAGCAATGATGGGAAGAAGGTCTCAAAGACAGATGAGTCGTCCCCCAGTTTAATGAATTTGCTGATGGGAGTCAAAGTATTACAGCAGGCAATTATTGATTTACTGTTAGATATAATGGTCGAGTGTTGTCAACCTTCAGAAGGGCCTTCTGTTCCTAGCAGTGGAACTACTACCACACCACTGGAAGGTGAAATTGAAAATGCAGCATCAGAGGTTGAAGATTTTCCTCCATTTCAGAGATTGGATTCCGTGGAGGAAAGTAGTAGTGCTCCTGCTGTACAAAGCTCTGACATGATTAGAACGGATAGGCAGGGTAAGTCTCTACCTGAAGACCTAATACATCCACCTGAAACATCTGCTGGGGTTTCGGAGAATGTCTTCCTTCGTACAAAGACCAAGTGGCCTGAGCAATCTGAGGAGCTTTTAGGCTTGATTGTAAATTCATTGAGAGCCCTAGATGGGGCTGTCCCTCGAGGATGTCCTGAACCAAGAAGACGGCCTCAGTCTGCACAAAAGATTGCTCTTGTGCTGGATAAAGCTCCCAGACATCTACACTCTGACCTGGTTGCACTAGTACCTAAATTGGTCGAGCATTCAGAACATCCTTTGGCTGCTGGTGTGCTTCTAGAACGGCTTCAACAGCCTGGTGCTGAGCCAGCACTGCGGATACCTGTCTTTGGTGCTCTTAGTCAATTGGAGTGTGGCACTGAAGTTTGGGAACAAATTCTATTTAAATCTATTGAGTTTTTAGCAGATTCGAATGATGAGCCTCTTGCTGCCACTATAGATTTTGTTTTCAAAGCTGGAGCTCAGTGCCAACATCTCTCTGAAGCGGTGAGATCTGTACGTGGTAGGCTGAAGAATTTGGGCATGGAGGTTTCCCCATGTGTTCTTGATTTATTAAGTAAAACTGTAAATAGTTGGGGTGATGTTTCTGATATTATACTCAGAGATATTGATTGTGATGATGCCGATGATTTCTGCTCAAAAATATCACGTGAGCTTTTCTTATTTGGTGAAGCTGGCTCCCCTTCAGAAAGTTTGCATCCATTGGATGAACAGGATTTACACGCTGCTCGTCATTTTTCTGATATTTATATCTTGATTGAGATGTTATCGATACCTTGTCTTGCCGTTGAAGCATCGCAGACATTTGAGAGAGCTGTAGCTCGTGGTGCCATCACAGCTAAATCTGTTGCTGTGGTGCTGGAAAAACGTCTTGCTCAAAAACCAAATAGTAACACTAGATATGCTGAAAGCTTCCAGCCTGGAGATTCTGTAATAGATGGAGAAACTAGCGAGCAGCTGAGAGTCCAGCGAGATGATTTTACTTCAATTGTTGGTCTTGCCGAAACATTAGCACTCTCCAGAGATCCTCGTGTTAGAGGGTTTGTGAAAATGCTGTATCCATTATTGTTTAAGTGGTATGCAAGTGAGTCATATCGGGCCAGGATGCTAAAAAGATTGGTTGACCGTGTAACCAGCAGTGCAGAAAATAACCGTGAAGTAGATATGGATTTGGAAATTCTGGTTATGTTGATTGGTGATGAACAAGAAATAATCAGACCTGTGCTAAATATGATGCGAGATGTTGCAGAACTAGCAAACGTTGACCGTGCTGCTCTCTGGCACCAGTTATGCGCTACTGAAGAGGAACTCGCCCGTATCCGTGAAGAAAGCAAAGTAGAAATTGCAAATATGATGAAAGAAAAAACTGCTCTGTCACAAAAGTTGAGTGAATCTGATGCTATGAATATTCGCCTCAAGAATGAGATGAAGGCTGAGTTGGAGCGATTTTCTCGTGAGAAAAAGGAGCTTTCTGAACAAATACATGACATTGAGAGTCAGCTTGAGTGGCTTCGCTCTGAGCGAGATGATGAGATTGTGAAGTTAACAGCAGAGAAGAAAGTTCTCCATGATCGTCTCCATGATGCTGAGACTCAAATTGCACAACTGAAATCCCGAAAACGTGATGAGATGAAGAAAGTAGTGAAGGAAAAAAATGCACTTGCTGAGAGATTGAAGAGTGCCGAAGCTGCTCGAAAAAGATTTGATGAACAACTGAAACGGTATGCAAATGAGAATATGACTAGGGAAGAAATCCGGCAGTCGCTAGAAGATGAAGTTCGCAGGCTTACACAAACAAAGGAGGAGCAGATTGCTCGATGTGAAGCGTATATTGATGGAATGGAAGCAAAATTGCAGGCCTGCCAGCAATATATCCATTCACTTGAAGCATCGCTACAAGAGGAAATGTCAAGACATGCCCCTCTGTATGGTGCTGGTTTGGAAGCTCTGTCAATGAAGGAGCTAGAGACATTATCCCGAATTCACGAAGAAGGATTGAGGCAAATTCATACTCTTCAGCAGCGCAAAGGGAGTCCGGCTGGCAGTCCTCTTGTGAGCCCCCATTCCCTCTCTCACAGTCATGGGTTGTACACTTCTGCACCGCCTCCAATGGCAGTCGGTATGCCTCCTTCACTCATCCCCAATGGCTCAGGGATCCACAGCAATGGGCATGTGAATGGTGGTGCAGTTGGACCATGGTTCAACCATGCTTGA 4995 43.38 MKQSISEAVSSSSTTASSDHSQSSSSSSSSSSTTPLEKPQSISAAAAAEDLAVGSRDGGGAQETVTVDRRGDFSAVCRWTVQNFPRIKARALWSKYFEVGGYDCRLLIYPKGDSQALPGYISIYLQIVDPRGTSSSKWDCFASYRLAIVNVLDDSKTVHRDSWHRFSSKKKSHGWCDFTPSSTVFDSKLGYLFNNESILITADILILNESVNFTRDNNEPASSMMMTSSLVACPAPEVLSGKFTWKVHNFSLFKEMIKTQKIMSPVFPAGECNLRISVYQSSVNGTEYLSMCLESKDTEKTVILPDRSCWCLFRMSVLNQKPALNHMHRDSYGRFAADNKSGDNTSLGWNDYMKMSDFVGQDSGFLVDDTAVFSTSFHVIKEFSNFSKNGGLIGGRNGSGIRKSDGHMGKFTWRIENFTRLKDLLKKRKITGLCIKSRRFQVGNRDCRLIVYPRGQSQPPCHLSVFLEVTDSRNTSSDWSCFVSHRLSVVNQKMEEKSVTKESQNRYSKAAKDWGWREFVTLTSLFDQDSGFLVQDTVIFSAEVLILKETSVMQDFIDQDMEPSGSSSLTDKVAKKSSFTWKVENFLSFKEIMETRKIFSKFFQAGGCELRIGVYESFDTICIYLESDQSVGSDPDKNFWVRYKMAVVNQKYPAKTVWKESSICTKTWNNSVLQFMKVSDMLEAEAGFLVRDTVVFVCEILDCCPWFEFSDLEVLASEDDQDALTTDPDELIDSEDSEGISGDEEDIFRNLLSTAGFHLTYGDNPSQPQVTLREKLLMDAGAIAGFLTGLRVYLDDPAKVKRLLLPTKLSGSNDGKKVSKTDESSPSLMNLLMGVKVLQQAIIDLLLDIMVECCQPSEGPSVPSSGTTTTPLEGEIENAASEVEDFPPFQRLDSVEESSSAPAVQSSDMIRTDRQGKSLPEDLIHPPETSAGVSENVFLRTKTKWPEQSEELLGLIVNSLRALDGAVPRGCPEPRRRPQSAQKIALVLDKAPRHLHSDLVALVPKLVEHSEHPLAAGVLLERLQQPGAEPALRIPVFGALSQLECGTEVWEQILFKSIEFLADSNDEPLAATIDFVFKAGAQCQHLSEAVRSVRGRLKNLGMEVSPCVLDLLSKTVNSWGDVSDIILRDIDCDDADDFCSKISRELFLFGEAGSPSESLHPLDEQDLHAARHFSDIYILIEMLSIPCLAVEASQTFERAVARGAITAKSVAVVLEKRLAQKPNSNTRYAESFQPGDSVIDGETSEQLRVQRDDFTSIVGLAETLALSRDPRVRGFVKMLYPLLFKWYASESYRARMLKRLVDRVTSSAENNREVDMDLEILVMLIGDEQEIIRPVLNMMRDVAELANVDRAALWHQLCATEEELARIREESKVEIANMMKEKTALSQKLSESDAMNIRLKNEMKAELERFSREKKELSEQIHDIESQLEWLRSERDDEIVKLTAEKKVLHDRLHDAETQIAQLKSRKRDEMKKVVKEKNALAERLKSAEAARKRFDEQLKRYANENMTREEIRQSLEDEVRRLTQTKEEQIARCEAYIDGMEAKLQACQQYIHSLEASLQEEMSRHAPLYGAGLEALSMKELETLSRIHEEGLRQIHTLQQRKGSPAGSPLVSPHSLSHSHGLYTSAPPPMAVGMPPSLIPNGSGIHSNGHVNGGAVGPWFNHA 1664
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29982633 29993511 - PI0002309.1 Cmetu04g2170 354614

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2170 1664 Coils Coil 1368 1388 - -
Cmetu04g2170 1664 SUPERFAMILY TRAF domain-like 576 701 - -
Cmetu04g2170 1664 SUPERFAMILY TRAF domain-like 409 550 - -
Cmetu04g2170 1664 ProSiteProfiles MATH/TRAF domain profile. 74 204 IPR002083 GO:0005515
Cmetu04g2170 1664 SUPERFAMILY TRAF domain-like 238 384 - -
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 1 43 - -
Cmetu04g2170 1664 SMART math_3 76 184 IPR002083 GO:0005515
Cmetu04g2170 1664 SMART math_3 245 358 IPR002083 GO:0005515
Cmetu04g2170 1664 SMART math_3 413 525 IPR002083 GO:0005515
Cmetu04g2170 1664 SMART math_3 581 681 IPR002083 GO:0005515
Cmetu04g2170 1664 CDD MATH 409 544 IPR002083 GO:0005515
Cmetu04g2170 1664 PANTHER TRAF-LIKE FAMILY PROTEIN 23 1663 - -
Cmetu04g2170 1664 Coils Coil 1439 1533 - -
Cmetu04g2170 1664 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 73 221 IPR008974 GO:0005515
Cmetu04g2170 1664 CDD MATH 578 700 IPR002083 GO:0005515
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 1599 1623 - -
Cmetu04g2170 1664 SUPERFAMILY TRAF domain-like 75 212 - -
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 1599 1629 - -
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 893 929 - -
Cmetu04g2170 1664 CDD MATH 78 204 IPR002083 GO:0005515
Cmetu04g2170 1664 ProSiteProfiles MATH/TRAF domain profile. 576 700 IPR002083 GO:0005515
Cmetu04g2170 1664 CDD MATH 241 373 IPR002083 GO:0005515
Cmetu04g2170 1664 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 401 553 IPR008974 GO:0005515
Cmetu04g2170 1664 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 236 384 IPR008974 GO:0005515
Cmetu04g2170 1664 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 565 702 IPR008974 GO:0005515
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 893 913 - -
Cmetu04g2170 1664 ProSiteProfiles MATH/TRAF domain profile. 408 544 IPR002083 GO:0005515
Cmetu04g2170 1664 ProSiteProfiles MATH/TRAF domain profile. 240 377 IPR002083 GO:0005515
Cmetu04g2170 1664 Coils Coil 1396 1434 - -
Cmetu04g2170 1664 Pfam MATH domain 82 206 IPR002083 GO:0005515
Cmetu04g2170 1664 Pfam MATH domain 439 546 IPR002083 GO:0005515
Cmetu04g2170 1664 Pfam MATH domain 589 696 IPR002083 GO:0005515
Cmetu04g2170 1664 MobiDBLite consensus disorder prediction 1 40 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2170 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2170 Cmetu-Chr4:29982633 Cmetu05g0035 Cmetu-Chr5:22762264 1.30E-19 dispersed
Cmetu04g2170 Cmetu-Chr4:29982633 Cmetu04g1981 Cmetu-Chr4:6014784 7.90E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g501 . . . Bda03g00075 . . Bma04g00072 . . . Cma01g01513 . Car09g00391 . . . Cpe06g00327 . . . . . . . Cla05g01725 Cam05g1838 Cec05g1852 Cco05g1909 Clacu05g1825 Cmu05g1709 Cre05g1840 . . Cone17ag1011 . Lsi04g02117 Csa03g04321 Chy04g00379 . . . . . . Bpe04g00061 . . Sed05g1711 Cmo01g01566 Cmo09g00453 Cma09g00443 . . . . Cpe02g00443 Bhi09g02224 Tan01g3626 Cmetu04g2170 . Hepe01g2009 Mch11g0545 . . . . . . . . . . . Cme04g00422
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007058 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 1 2 37