Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2228 ATGGCTAGCGAGGCAACCAGAGAAATGCAATCATCAGTCGATTCGAAGAAGAAAGGCGTGGAGGAGGAGAAAGAAGAGAAAGAGGAAGAGGAAGAGAAAGAGGAAGAGAAGATCGTGAAATTGCCACCGGCGCCGGAGAAGCCGTTGCCGGGGGATTGTTGTGGGAGTGGATGTGTTCGATGTGTGTGGGACGTGTATTACGAAGAGCTTGAAGATTACAACAAGCTTTGCGAGAAAGAAAAAGAGGGTAATGACCCGTCAAAAGGCCCAGTATGCCTAATGGGCCTCATAATATATATGGAGATTTTAGAGACGATGATGCGGGGATTTCATTTTCATTTGACTCTGGTTGTGGCGGTGATCACTCTCGCCGCCCTTTATCCTAGAGATGGCCTTACCGGAGCTGAAGCTGCCACTTCCACTTCCGCTTTCGTTCAGAACGTCATCTACTCTAACAGGATTGCTATGTTCTCCAAATCCTACTGCCCATATTGCTTGGGTGCCAAACGTATATTCAGTGAACTCCATGAAAAACCTTTTGTTGTGGAGCTTGATCTTCGAGATGATGGACCTCAAATTCAGAGTGTTCTACTAGACCTGACTGGAAAGCGAACTGTTCCTCAAATTTTTGTGAATGGCAAGCACATTGGTGGCTCTGATGATCTGAAAGCTGCGGTTGCCAGTGGTCAGTTGCAGAAACTTCTGGCTTCAACTTGA 717 46.86 MASEATREMQSSVDSKKKGVEEEKEEKEEEEEKEEEKIVKLPPAPEKPLPGDCCGSGCVRCVWDVYYEELEDYNKLCEKEKEGNDPSKGPVCLMGLIIYMEILETMMRGFHFHLTLVVAVITLAALYPRDGLTGAEAATSTSAFVQNVIYSNRIAMFSKSYCPYCLGAKRIFSELHEKPFVVELDLRDDGPQIQSVLLDLTGKRTVPQIFVNGKHIGGSDDLKAAVASGQLQKLLAST 238
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 3907727 3909700 + PI0025034.1 Cmetu04g2228 354672

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2228 238 ProSitePatterns Glutaredoxin active site. 156 171 IPR011767 -
Cmetu04g2228 238 NCBIfam glutaredoxin 154 235 IPR011899 -
Cmetu04g2228 238 MobiDBLite consensus disorder prediction 10 24 - -
Cmetu04g2228 238 Gene3D Glutaredoxin 135 238 - -
Cmetu04g2228 238 SUPERFAMILY Thioredoxin-like 143 236 IPR036249 -
Cmetu04g2228 238 PRINTS Glutaredoxin signature 154 172 IPR014025 -
Cmetu04g2228 238 PRINTS Glutaredoxin signature 213 226 IPR014025 -
Cmetu04g2228 238 PRINTS Glutaredoxin signature 199 212 IPR014025 -
Cmetu04g2228 238 MobiDBLite consensus disorder prediction 1 43 - -
Cmetu04g2228 238 ProSiteProfiles Glutaredoxin domain profile. 142 238 - -
Cmetu04g2228 238 CDD GRX_GRXh_1_2_like 153 234 - -
Cmetu04g2228 238 FunFam Glutaredoxin 2 136 238 - -
Cmetu04g2228 238 Coils Coil 10 40 - -
Cmetu04g2228 238 PANTHER GLUTAREDOXIN 2 135 236 - -
Cmetu04g2228 238 Pfam Oxidoreductase-like protein, N-terminal 39 80 IPR019180 -
Cmetu04g2228 238 Pfam Glutaredoxin 154 216 IPR002109 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2228 K03676 - - csv:101222985 254.988
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0701 Cmetu-Chr2:22017659 Cmetu04g2228 Cmetu-Chr4:3907727 1.10E-28 dispersed
Cmetu04g2228 Cmetu-Chr4:3907727 Cmetu09g0212 Cmetu-Chr9:18905783 7.30E-20 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g1065 . . . . . . . . . . . Cma07g00450 . Car07g00396 Sed14g1172 Cpe19g00839 . Bhi03g00897 Tan03g2045 Cmetu04g2228 . Hepe04g1567 . . Cla01g01954 Cam01g2043 Cec04g1701 Cco04g1766 Clacu01g2065 Cmu01g1942 Cre04g1616 . Cone12ag0734 . . Lsi01g00629 . . Cme08g00901 . Blo06g00329 . . . . . . . . Cmo07g00447 . . . . . . . . . . . . . . . . . . . . . Csa06g03296 Chy02g00599 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012931 0 1 0 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 28