Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2331 ATGGAAAATCATGGTGATGACCCTAATAGTCCAAATCACGGCTGTGAGAGGGCGGAGCCGGTGAGATCACGGTGGACTCCCAAACCGGAGCAGATTCTAATTTTGGAGTCCATTTTCAATAGTGGAATGGTTAATCCTCCTAAAGATGAGACTGTTAGAATAAGAAAGCTTCTTGAAAAATTTGGTTCTGTTGGGGATGCTAATGTTTTTTACTGGTTTCAAAACCGTCGCTCTCGCTCTCGCCGTCGCCAACGTCAGCTACAAGCCGCCGCTACTCACCAAGGTAGCAGCGGTGCAATTCACTACGATTGTGGTAACGTCGGCAGTGGCGGTTACAACGGTGGTAGTGGTGGTATTATGAATTTTGCTGGGGTTTCCTCTTCTTATCTTGGAGGAGGGTCCTCATCTTCGTCCTCCTCCGCTTCTGGGGTTGGAGGAGATTGTAGCGGTGGCAGTGGCGGCGGCAGTGGTTTTTCGATGTCGGGTCATATGGGTTTCTCAGAAGTTGATCAACAAATGGTTGTTACAAGTACTCCATCCTTTTGCTCTTCGGAAACATCAAATTTAGAGTTTCAATCAGGTTATATTATAATATTCATAAATGGAGTTCCAACAGAAGTACCAAAAGGAGCAGTGGATATGAAAGCAATGTTTGGGGAAGAGACAGTGTTAGTTCATTCATCAGGACTCCCAGTTCTTACCAATGAATTTGGAATCTCTCTCCATACTTTACAGCATGGTGAAAGCTATTTTCTGGTTTCAAGACCAACATGA 774 44.96 MENHGDDPNSPNHGCERAEPVRSRWTPKPEQILILESIFNSGMVNPPKDETVRIRKLLEKFGSVGDANVFYWFQNRRSRSRRRQRQLQAAATHQGSSGAIHYDCGNVGSGGYNGGSGGIMNFAGVSSSYLGGGSSSSSSSASGVGGDCSGGSGGGSGFSMSGHMGFSEVDQQMVVTSTPSFCSSETSNLEFQSGYIIIFINGVPTEVPKGAVDMKAMFGEETVLVHSSGLPVLTNEFGISLHTLQHGESYFLVSRPT 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6784083 6787293 + PI0001286.1 Cmetu04g2331 354775

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2331 257 PANTHER WUSCHEL-RELATED HOMEOBOX 11 1 256 IPR044558 GO:0003700|GO:0048830
Cmetu04g2331 257 Pfam Homeodomain 22 82 IPR001356 GO:0003677
Cmetu04g2331 257 Gene3D - 22 89 - -
Cmetu04g2331 257 FunFam WUSCHEL-related homeobox 11 22 89 - -
Cmetu04g2331 257 SMART HOX_1 20 87 IPR001356 GO:0003677
Cmetu04g2331 257 SUPERFAMILY Homeodomain-like 18 90 IPR009057 -
Cmetu04g2331 257 ProSiteProfiles 'Homeobox' domain profile. 18 83 IPR001356 GO:0003677
Cmetu04g2331 257 MobiDBLite consensus disorder prediction 1 24 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2331 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g1771 Cmetu-Chr4:1851017 Cmetu04g2331 Cmetu-Chr4:6784083 2.90E-26 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi8g89 . . . . Bpe04g01358 Bpe03g01065 Bma04g01433 . . . . . . . . . . . . . . . . . . . . . . . . . . Cone13ag0444 Cone19ag0299 . . . . Blo07g01201 Blo09g00348 Bda03g01494 Bda05g00996 . . . . Sed02g0298 . . . Cma14g00454 . Car14g00419 Cpe03g00402 . Bhi11g02705 Tan08g1414 Cmetu04g2331 Lac10g2499 . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu12g1142 . 1 193 Wox Gene Family AT3G18010 51.5 1.1e-40 164.5
Cmetu04g1771 . 1 373 Wox Gene Family AT2G33880 50.5 1.2e-67 254.2
Cmetu04g2331 . 4 253 Wox Gene Family AT3G03660 50.2 1.4e-52 203.8
Cmetu06g1412 . 1 277 Wox Gene Family AT4G35550 51.0 1.1e-72 270.4
Cmetu07g0405 . 1 188 Wox Gene Family AT4G35550 62.2 2.5e-56 216.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005221 2 1 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7812 PF00046 Homeodomain 6.70E-13 CL0123 Cmetu TF