Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2409 ATGGAGGCTGGATATGGAGGCGAAGCTTGTCAATTGTATGGTATGGGTACTATGGACTTGAGGGCTGCTGTTGGGAAGCGGAATCTGGAATGGGATTTGAATGATTGGAAATGGGATGGAGATCTCTTTATTGCTAGGCCTTTAAATACGGTTGAATCTGGTCATTTGAGTAGGCAACTTTTCCCAATCGTCTCTGGGATTCCCCTGACGAACGGGGGTTCGTCGAATAGTTCCTCGTCATGCTCTGATGAAGCTAACATGGGGATTGAGAAAGGGAAAAGGGAAGTGGAAAAGAGGAGGAGGGTTACTGTTATAGAAGATGAGAATCTTAATGATGAAGCACGTACTTTGAGTTTGAAGGTTGGTGGAAATGGTTCTCAGATTGTTGAGAGAGATGCAGGGAGTTGGGAAGGAACCAGTGGGAAGAAGACTAAATTGGCTGGGGGAAATTCAAATCGTGCAGTTTGCCAGGTAGAGGACTGTGGAGCAGATCTGAGCAATGCGAAAGATTACCACAGACGACATAAAGTCTGCGAAACGCATTCTAAGGCGAGTAATGCACTTGTTGCTAATGTTTTGCAGCGATTCTGTCAACAATGTAGCAGGTTCCATGTTCTTCAAGAGTTTGATGAAGGGAAACGAAGTTGTCGCAGGCGTTTGGCTGGCCATAATAAGCGCAGAAGAAAAATTAATCCAGACAATGTTGTTAATGGAAACTCCCCACCTGATGAGCAGACTAGTAGCTATTTACTGTTAACTTTATTGCGAATACTTGCAAATTTACACTCCAATGGATCAAATCAGACCACAGATCAGGATCTTCTTTCTCATCTTATACGAAGTCTTGCCTGCCAATCTAGTGAGCATGGGGGGAAAAACCTATCTGGGATTCTGCATGAACCCCAGAATTTGCTGAACAACGGGGCATTAATTGGTAAATCAGATCTAGTTTCTACTTTTCTCTCAAATGGTCCTCAGGTTCCTTTGAGATCTTCTAAACAACATGACACCCCTATACCTGAGATACCAGCACAAGCCATTGGTAGGGGTGGTGATACACCAGCTATATCTTCTATTAAACCAAGCACTTCAAACAGCCCTCCCACATATTCTGAAATCAGGGACAGTACAGTTGGGCAGTGCAAGATGATGAACTTCGATCTGAATGATGCTTACGTTGACTCAGACGATGGCATGGAAGATATTGAAAGACAAACACTCCCAGTGCACATGGGAACAAGTTCTCTTGAATGTCCTTCTTGGGTGCAACAGGACTCTCATCAGTCAAGTCCTCCTCAAACTAGTGGAAATTCAGATTCAGCATCTGCCCAGTCACCTTCAAGCTCTGCTGGAGAAGCCCAGAGCCGCACAGATCGCATCATTTTGAAATTATTTGGGAAAGCACCGAATGATTTTCCTCATGTTTTGCGAGCTCAGGTTCTCGATTGGTTATCGCACAGTCCCACGGAGATAGAGAGCTATATCAGGCCTGGTTGTGTTGTTCTAACAGTATACGTACGGCAGACCGAAGTTGCTTGGGACAATCTTTGCCATGACCTCAGTACCAGTTTTAATAGACTTCTTGATGTTTCGGATGATGCTTTCTGGAAAACTGGATGGGTTTATGTGCGGGTTCAGCATCAAATAGCTTTTGTTTATCATGGTCAGGTTGTAGTTGACACCTCCTTGCCTCTTAGAAACAATAATTACTGTAGGATCACAAGTGTAAACCCAGTTGCCGTTTCTACATCTAAGAAGGCTATGTTTTCAGTTAAAGGAATAAACTTGAGCCAACCTACAACTAGGTTACTCTGTGCAATTGAAGGGAAATATCTAACTCAGGAAGCTTCAGATGAGTCAACAGAAAGTGATCATAACTTGAAGGCACAAGATGACAGCCAATGTGTTACCTTTTCCTGCTCTATTCCTGTTGTCTATGGAAGGGGATTCATTGAGGTTGAAGATGATGGTTTTAGCAGCAGCTCCTTTCCTTTTATAGTTGCAGAGGAGGACGTTTGTTCTGAGATCTGCTCACTTCAGAGTGCATTAGAATTAACTGAAACATGTTCAAATTCCGGGGAAACTGCAGAGCTGGAAGGAAGGAGTAACGCGATGGAATTTATTCATGAAATTGGTTGGCTGTTCCATAGAAATCAATTGAAGTCTAGATTAGGCCACTTGGATCCTAATGAAAATCTCTTTTCACTGCCACGGTTCAAGTGGCTCATGGAGTTCTCCATGGACCATGATTGGTGTGCTGTGGTTAAAAAGCTGTTAGATATTCTTCGAGATGGAACCGTGGATGCTGGAGGTCACCCCTCTTTGAATCTCGCATTGATGGAGATGGGTCTACTTCACCGAGCAGTGAGAAAAAACAGTAGATCACTGGTAGAGCTCCTTTTGAGATATCCTTCAAAAGTGAAGGATGCATCAAGTTCTGAAGACAGTGCATCTGTTGATGGAGAGGTTGATAGCTTCCTGTTTAGACCTAATGTTGTAGGCCCAGCTGGTTTAACCCCTCTTCACATTGCAGCTGGTAAAGATGATTCCGAGGATGTTCTTGATGCATTAACCAATGACCCGGGAATGGTGGGAATTGAGGCTTGGAAGAGTGCTCGAGATAGCACAGGCTCAACGCCAGAGGATTATGCCCGTTTACGTGGCCATTACTCTTATATTCGCCTTGTCCAGAGGAAAATCAACAAGAGATCTGCAGCTGGTCATGTAGTGCTGGATATTCCTAGTTCTCTCTCAGATGGTAGCTGGAATCAAAAGCAGAACACTGATTTGACCTCCTCCAGGTTTGAGATTGGTAGGACGGAACTAAAACCTAGTCAGCAGCACTGCAAGCTTTGTGTCAGGAAACCGCTGGGTTGTGGAACATCATCTAGCGCGTCTTTGGTCTACAGGCCAGCAATGCTTTCGATGGTGGCCATTGCTGCTGTTTGTGTTTGTGTGGCACTCCTATTTAAAAGCTCGCCCGAGGTTCTCTATGTCTTCCGGCCCTTCCGATGGGAACTATTAGATTACGGTACTAGTTAG 3042 44.38 MEAGYGGEACQLYGMGTMDLRAAVGKRNLEWDLNDWKWDGDLFIARPLNTVESGHLSRQLFPIVSGIPLTNGGSSNSSSSCSDEANMGIEKGKREVEKRRRVTVIEDENLNDEARTLSLKVGGNGSQIVERDAGSWEGTSGKKTKLAGGNSNRAVCQVEDCGADLSNAKDYHRRHKVCETHSKASNALVANVLQRFCQQCSRFHVLQEFDEGKRSCRRRLAGHNKRRRKINPDNVVNGNSPPDEQTSSYLLLTLLRILANLHSNGSNQTTDQDLLSHLIRSLACQSSEHGGKNLSGILHEPQNLLNNGALIGKSDLVSTFLSNGPQVPLRSSKQHDTPIPEIPAQAIGRGGDTPAISSIKPSTSNSPPTYSEIRDSTVGQCKMMNFDLNDAYVDSDDGMEDIERQTLPVHMGTSSLECPSWVQQDSHQSSPPQTSGNSDSASAQSPSSSAGEAQSRTDRIILKLFGKAPNDFPHVLRAQVLDWLSHSPTEIESYIRPGCVVLTVYVRQTEVAWDNLCHDLSTSFNRLLDVSDDAFWKTGWVYVRVQHQIAFVYHGQVVVDTSLPLRNNNYCRITSVNPVAVSTSKKAMFSVKGINLSQPTTRLLCAIEGKYLTQEASDESTESDHNLKAQDDSQCVTFSCSIPVVYGRGFIEVEDDGFSSSSFPFIVAEEDVCSEICSLQSALELTETCSNSGETAELEGRSNAMEFIHEIGWLFHRNQLKSRLGHLDPNENLFSLPRFKWLMEFSMDHDWCAVVKKLLDILRDGTVDAGGHPSLNLALMEMGLLHRAVRKNSRSLVELLLRYPSKVKDASSSEDSASVDGEVDSFLFRPNVVGPAGLTPLHIAAGKDDSEDVLDALTNDPGMVGIEAWKSARDSTGSTPEDYARLRGHYSYIRLVQRKINKRSAAGHVVLDIPSSLSDGSWNQKQNTDLTSSRFEIGRTELKPSQQHCKLCVRKPLGCGTSSSASLVYRPAMLSMVAIAAVCVCVALLFKSSPEVLYVFRPFRWELLDYGTS 1013
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14064083 14076709 - PI0019847.1 Cmetu04g2409 354853

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2409 1013 MobiDBLite consensus disorder prediction 356 373 - -
Cmetu04g2409 1013 MobiDBLite consensus disorder prediction 327 373 - -
Cmetu04g2409 1013 Gene3D - 737 902 IPR036770 -
Cmetu04g2409 1013 SUPERFAMILY SBT domain 154 235 IPR036893 GO:0003677|GO:0005634
Cmetu04g2409 1013 SUPERFAMILY Ankyrin repeat 779 895 IPR036770 -
Cmetu04g2409 1013 Gene3D - 147 217 IPR036893 GO:0003677|GO:0005634
Cmetu04g2409 1013 FunFam Squamosa promoter-binding-like protein 14 147 217 - -
Cmetu04g2409 1013 ProSiteProfiles Zinc finger SBP-type profile. 153 230 IPR004333 GO:0003677
Cmetu04g2409 1013 MobiDBLite consensus disorder prediction 419 454 - -
Cmetu04g2409 1013 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 74 899 IPR044817 GO:0003677
Cmetu04g2409 1013 MobiDBLite consensus disorder prediction 222 242 - -
Cmetu04g2409 1013 Pfam SBP domain 156 229 IPR004333 GO:0003677
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2409 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2409 Cmetu-Chr4:14064083 Cmetu07g0660 Cmetu-Chr7:24678164 1.00E-118 dispersed
Cmetu04g2409 Cmetu-Chr4:14064083 Cmetu12g1305 Cmetu-Chr12:882778 7.40E-29 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 181 1013 SBP-box Gene Family AT2G47070 55.5 2.9e-240 828.6
Cmetu12g1305 . 121 279 SBP-box Gene Family AT1G69170 54.1 2.0e-41 167.2
Cmetu04g2409 . 25 1013 SBP-box Gene Family AT3G60030 54.0 6.3e-277 950.7
Cmetu07g0660 . 1 1003 SBP-box Gene Family AT1G20980 50.3 1.9e-261 899.4
Cmetu07g0660 . 1 677 SBP-box Gene Family AT1G76580 50.9 9.9e-166 580.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003053 3 3 4 4 3 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 0 1 2 1 2 2 2 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7817 PF03110 SBP 6.90E-30 No_clan Cmetu TF