Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2436 ATGGGTTGTGCAAATTGGAATTTGTTCATGAAGATCCTAATTGGGCTGCTCTTGGTTTTCATCAACCCTTTTTGCTTTGGAGATACTGACCTTCGCGATGTTGCTGCAATCAATGCATTATTTATTTCTCTTGGCTACCCTCCTTTGCGAGGATGGATTCTTGTGGGAGGTGATCCATGTGGGGAGAAGTGGCAAGGGGTTGAATGTGTATTCTCAAATATAACAGCTTTACAACTCAGTGGATTGAATTTAGGAGGAGAGCTAGGCACTAGCTTGGACCAATTCGAGTCAATAATATCAATGGATCTTAGCAACAATCATATTGGAGGGAATATTCCATCTACACTGCCCCCTACACTGAGAAGTCTTTCTTTATCAGCTAATCAATTCACTGGAAGCATTCCCCCTGCACTGGCCTCGCTAACACAACTTATGGACCTGTCACTAAATAATAACCTTCTTACCGGGGCAATACCTGATGTCTTCCAGCTGCTTAATGGCTTGAATAACTTGGACATGTCAAGCAACAACTTGAGTGGTCAGCTGCCTCCTTCGGTGGCTGATTTGTTATCCCTTACTACATTACACTTGCAGAACAATCAACTTTCTGGGATGCTTGACGCTCTACAGGATCTTCCGTTGTCGGACTTGAATATAGAGAACAACCTATTTTCTGGACCTATACCTGCAAAGTTGTTGGGCATTCCAAATTTCAGAAAAGATGGGAACCCTTTCAATACTACGATAATTCCGTCTGCACCTGCTTTAGCTCCTTCACCATTTGCTGTTGCGCCAGTTACTGTGGGACCACCAACCAGACAGGCAGGTGCAGGTCAGCCATTGTGGCCAGGAACTCCTGAATCAGATGGAGGAAAGAGTTTTTTCTCTGCTAAGCGGATCATTTGGATTGTTATTATTGGCACAGTAATATTAGTAGCATTAGGATTCTGTCTTCTTGTGTCAATATGCTTGAAAAGAAGCAAGCATCGAGAAGACAACAAGATTGTTCGTGACAACGCTGATATGGCTTCTAAATATAAGCCTAAACCCGTGAAGCCCTCGGTTGAAAGTGTAGACATGGAGAAAGGTCCAAAGGAGACCACTCTTAAGCCACTTGATAGAGACAGAATGAAGGATAGAATAATGGACTTTACAACCCCAAGGCTACATGATAGACAGGGCACAAATGGGAAAAGAAAAGATGCCTCTAATACGAGTTTCCGTATAGACCATACAGAGAGCTCGAGCATAAGCATAGATGACTTCCCTCTACCACCTCCTCCCCCTCCTTTTCCACTCCTTTCAACTCAGGAGATTGCAAAACCATTTGTGGCGGCTGAAGTGCCCAGTAAAGTACCTAGAAAACTGAAAACAAGTTCTTTAAAAGTTTTCACAATTGCGTCACTTCAGCAGTATACTAATAGTTTCTCTGAAGATAATCTTCTTGGGAGAGGCATGCTTGGTAGTGTCTATAGTGCTGAACTTCCAAGTGGAAGGCTTCTGGCTGTTAAGAAACTGGATGGATCCTCTTCAACTCATTGGCATGATGATGATTTTCACAACCTTGTGTCTGACATATGTCAAATTCGGCACGATAACATTGTGGAGCTTGTGGGATATTGTGCTGAGCATGGACAATATCTACTCATTTATGAGTATTGCAAAAATGGCACGCTCTATGACGCACTCCATGTCGACAAGGAGATGCATCAAAAGCTTTCATGGAATGTACGCGTGAGGATTGCACTTGGAGCTGCACGTGCCCTCGAGTATCTGCATGATGCCTGTCAACCGCCCATCATGCACCAAAATTTTAAGTCTGCTAACATTCTCTTGGACAATGAGCTAAAACCACGAGTCTCTGACTCTGGCTTAGGTCGGCTGCTGCCTTCAGCTTCTCAGTCATCTGCACAATTCCTCCCAGCTCAGGGTTATAGTGCTCCTGAATTTGAGCTAGGAACTTACACTTACCAAAGCGATCTTTATAGCTTTGGAGTCGTAATGCTAGAGCTTCTGACTGGTCGAAAGTCCTGCGACCGATCACTGCCTCGAGGAGAACAATTTCTTGTTCGATGGGCTGTTCCAAGGCTCCATGATATCGATGCATTATCAAGAATGGTCGATCCATCACTTAATGGCATGTATCCTGTTAAATCGTTATCGCGCTTTGCTGATATTATTTCCTCTTGCATAATGGTAACATTCTCTACAACTTTTGCTTCATGTCAAGTTACCATGGATATTTACTTCTCTTTACTAACATTTTCGGCCAACCTTTTGGCAGAGAGAGCCTGA 2295 43.53 MGCANWNLFMKILIGLLLVFINPFCFGDTDLRDVAAINALFISLGYPPLRGWILVGGDPCGEKWQGVECVFSNITALQLSGLNLGGELGTSLDQFESIISMDLSNNHIGGNIPSTLPPTLRSLSLSANQFTGSIPPALASLTQLMDLSLNNNLLTGAIPDVFQLLNGLNNLDMSSNNLSGQLPPSVADLLSLTTLHLQNNQLSGMLDALQDLPLSDLNIENNLFSGPIPAKLLGIPNFRKDGNPFNTTIIPSAPALAPSPFAVAPVTVGPPTRQAGAGQPLWPGTPESDGGKSFFSAKRIIWIVIIGTVILVALGFCLLVSICLKRSKHREDNKIVRDNADMASKYKPKPVKPSVESVDMEKGPKETTLKPLDRDRMKDRIMDFTTPRLHDRQGTNGKRKDASNTSFRIDHTESSSISIDDFPLPPPPPPFPLLSTQEIAKPFVAAEVPSKVPRKLKTSSLKVFTIASLQQYTNSFSEDNLLGRGMLGSVYSAELPSGRLLAVKKLDGSSSTHWHDDDFHNLVSDICQIRHDNIVELVGYCAEHGQYLLIYEYCKNGTLYDALHVDKEMHQKLSWNVRVRIALGAARALEYLHDACQPPIMHQNFKSANILLDNELKPRVSDSGLGRLLPSASQSSAQFLPAQGYSAPEFELGTYTYQSDLYSFGVVMLELLTGRKSCDRSLPRGEQFLVRWAVPRLHDIDALSRMVDPSLNGMYPVKSLSRFADIISSCIMVTFSTTFASCQVTMDIYFSLLTFSANLLAERA 764
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 2302745 2307652 + PI0022405.2 Cmetu04g2436 354880

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2436 764 ProSiteProfiles Leucine-rich repeat profile. 191 213 IPR001611 GO:0005515
Cmetu04g2436 764 MobiDBLite consensus disorder prediction 388 424 - -
Cmetu04g2436 764 ProSiteProfiles Protein kinase domain profile. 476 750 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g2436 764 SUPERFAMILY Protein kinase-like (PK-like) 453 736 IPR011009 -
Cmetu04g2436 764 Pfam Leucine rich repeat 118 178 IPR001611 GO:0005515
Cmetu04g2436 764 Gene3D Transferase(Phosphotransferase) domain 1 554 741 - -
Cmetu04g2436 764 SUPERFAMILY L domain-like 35 237 - -
Cmetu04g2436 764 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 554 742 - -
Cmetu04g2436 764 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 444 553 - -
Cmetu04g2436 764 Gene3D Phosphorylase Kinase; domain 1 444 553 - -
Cmetu04g2436 764 Gene3D Ribonuclease Inhibitor 39 253 IPR032675 -
Cmetu04g2436 764 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE PXC1 18 731 IPR046959 -
Cmetu04g2436 764 MobiDBLite consensus disorder prediction 388 407 - -
Cmetu04g2436 764 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 30 256 - -
Cmetu04g2436 764 MobiDBLite consensus disorder prediction 344 370 - -
Cmetu04g2436 764 Pfam Protein kinase domain 477 679 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g2436 764 MobiDBLite consensus disorder prediction 352 370 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2436 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1679 Cmetu-Chr1:2845855 Cmetu04g2436 Cmetu-Chr4:2302745 2.90E-134 dispersed
Cmetu04g2436 Cmetu-Chr4:2302745 Cmetu12g0052 Cmetu-Chr12:11171770 4.00E-112 dispersed
Cmetu04g1423 Cmetu-Chr4:2256200 Cmetu04g2436 Cmetu-Chr4:2302745 2.00E-31 proximal
Cmetu04g2436 Cmetu-Chr4:2302745 Cmetu04g0850 Cmetu-Chr4:6243557 2.40E-56 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007627 1 3 1 0 1 0 2 0 0 1 1 0 1 1 1 1 0 2 1 0 1 1 1 1 1 1 1 0 1 0 25
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70400 PF00069 Pkinase 1.50E-32 CL0016 Cmetu PK