Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2517 ATGGAGTATCGAGCGTCGTCAACTGTCTACAACAAGTTTTCAAATGCTCGTAGTTTCAACGATAAATCGGCGTACGATGGCGTCTTTGCTGCTCCGTCAAAGCACGGAGCTCCGGTCTTCTCTGCTCGAGTTGAGGACTACAGAGAGATTTTTGGCGGTTCGCGAGTTTCTTCGATTCCGATTCTCGATGTTCCGGCACTGAGCGATAAGAAGTTTCCGGTTGATGTTCGTACTTCGAAAGTTGAATATTCGAAGATTTTTGGTGGCTTTGATGAGTTAAATTTCGCCATACCTTATGAGGAGCTTCTGGTGGAGGCAAACAAAACAACCTCGTTTTCTCAGAAAACTCGGATCACAGCTGGAAGAGGATCCACGGCAGCTGAAAATTCTTCTCAGTATGAAAAGGAAAGTAACTTTTCCACCCGTGAAGCATCATCTCAACCACTTGATAGAATGGAGAAATTCAGCGTGTCCTCTCAAAAGATCAACCAAGGAAACAAAAGTTATGCTACGGAGACAACTCATGTAGCTCTTCCCCATGCCATTCCAGGTTTTTCATGTGTAATTGATCAACAATCTCCTGTACAGATGTCTGGAACTGGTATGCCATCATCCGAAAAATGGAATAATATTCGCCCAGAAAACATTGGGAGTACTGAAGTGGCAGATAAGTCTGAGCTTCCAATTTCTGGTGATAGTGAGCAGGTATTTAAGTCAAGTAATCCAACCAATTCTCAGAGCAGAACTGGGTGGTTTAGATCAGATTCAGCTGATAAGTTATTCAATGGGTATGAGGTGGATCAAGGGTTACAGAACCCTGACACTCCACCAAAATGTAATTTTCTGCCTAAATTTGGTATAAGTGCGGGATTTTCAGGGAGAACAACTGGTTTAAAGTCTGAAGCTTTTGAACATTCTGAAGATCCTTGTGACGGTTCTTCACCGCCATATTTTGGTGAGGATGTGGAGGTGAATCCAGTTGCTGCTGCCTCTGTTGCAGCTTTGAGAAAAGCAATTGATGCTGCTCAGGAAAGTATAAAAATTGCTAAGGAGTCGATGGAAAGAAGGAAAACTGCCGGACTTCAAAAACATAAAAAAGCAAAGTCTTCGAGGCTAAATTCTGAAGAGAAAAGGGGAGTACAAACTTCAAATAATTCAGGCACATGCCAAGAGAAGGTGGCTGGGGAAACTTGTGGAAAAGTGGATACTTTGGAGCAAGTGGTTGCTGAAATCAGGAGACAGAATTCAACTACAGAATGTCCTGTCACTCAAAGTGCAGTGAGGGAAAATTTAAATGCCTCAGGAACAAATTATATGGAATTTAAGATGACGGAAGTTGATTGTAGGGAGGAAGAGGGTGAAGAATTAGATGCAAAAGAACAATTTTATGAACCTAGGTCTTTTGGTGAAGACGAGCCAGAAGAACCGGAACCTGTCAAGGAAGACAATGCAGATGGATATGAATGGCAAGAAAACAATGGATTGAAGAAAACATTTGAGAATCCTGGAGAGTCTGGTGATAGCTTGGTTGTGGTCAAAGAGGCTGGACCGGAGGAAAGTGGCATAAACTTTAGTGTAGTGAAAGGCATTCTTATGAGCAAATTAAAGTCAGTTCTAGGTGTCGTTGAGCATGAAGATGATAAAATGAAATGTGGCCAAAACCAAAACCAGCTAGAAACAAACAAGAAAGTTGAGTCGTCAATGGAGCATGAAAAATGTGTGGAATTGCTGGAACAACTTAAAGTAACAAAAGATCACGAGGAGTTTGTAAACAAGGAGATGGAGGAAGAGAATGATACGGAGACCCATGTTAAGGCCCATCAATGGGTGGTGGAGGAAGTAAGACATATCTGCCAACAAGAAGAAAAGGAGATGGAAACAAATACTGTCCAAATTGAAAATAATGTTGAAAAGATATTAGACAAATCTAATGAAGATGAAAGAAATATAAATTTGATTGATGATTTCCATGATGGCCAAGATTCTCATGACATGGAAGAAAGTGGCAAATTGAAACTAAGCAGCCTTCAAGAAAACAAACAGGATGATGAGATGATTGAAGGGATTTCCTTTCATTTGTTCAATCTCAAGATTGAACATGTTCTTAGACAAATAAACATTGGTGAATGTGGAGTACCAGAAATCATTGTAAAAGCGACGCTAGACAATCGGAATACCGAGAGTAAAATTGAATTACAAGGTGGTTCATGTAAGCAGGATGAGTTTGGCAAACTCTCAGAAGATCAGGAAGCTAGTGATTTTATAGAAAGTATGGAAGGAGTGGAAGTGATTCCTGACCAACCTGCATACCGAGACACTGACAATTCAAAAGATGTAGCAAAAATTTCCTTTGAAGTTGAAAATAATGAATCTGAGACAATTACAGAGGGTGACATGGGGGATAGATTGCCTTTTGAATTGTTTTCCCTGGCCGAGGAGGCACTTAAACGTAGAGAATTTAAAATTAGGATGGATGATTCACACACAAGCCCTATTTTAATCCAAAATGGGGTAGATTTTGGCGTGATCGATATTAAATTGGGGCAGAAATATAAAGAAGCTTTGGCTCCAGAATTTAGAGAAATTGTGAGAAATATAAAGGAAATTGAATTCTCAACAAACAAAGAAAATGATGACAACAATTCAAATGAAGAAGAGACATTCCGAACTGTAAATAATATGAATTTTGAATCAAGCAATGAGCCTAGTACATCTGAAGATGACAAGAAAATCAGTGAAGAAGCAATGGAGGAAATGGTCTCGAGCATAATTACTAAAGCAACTCAGGAGAACTATCAAGCAACCATCAAAGTAGAAGAAAGTGAAACTGATTATGTATTGAAAAAGGAAATGCAGTTAGACTTCGATGAGAACAATAATAGAGCAGGTAGCCAATCTGGCACGATTGAAATAGATTCGGGAATAATTCATATGATCAAAACAAGTCAAAGTTCAAGAGAAAGTGAGGAGAGTTATCAAGTGACAGAGGATGAAATGGAAGCTAGTAGTTCCTCTGACGAAGAGGTGGAATATGCAGCTCACTTGGAAAATTTAGAAGTTAATTCGCCTGGAAGTTCTGGAAGAAAAGAAAATTTTGCTGATATAGAACAGGAAATTAGTACTAGCCAAAAGGTTACAGATAATGAGGATCATCAAACGACCCCAACACTGGGTGAAACTGAAACTAATGCTGACATGCAGACAAGAGAAGCGGGGGTTGAATCCAAATTCAACAGTGAGACAGCAGCTCGTGGTTTGTCTCAAGCTAAAGAGGTATTAGAGAAGTTCGCTGAGAATTTGGCGAATCAAAGTATCTTAGGAACTGGGGAGAATGATCAAGGAACCCATTTAATGGAGGAGGAGAAGGTATTCCATGAAACATTTGAGAAAGAAGCTGAAGTGATTAAGGGACGGCAGAGAAAAATTGATGAAGCCAAAGAAAAGGAGAAAGAGAGAGAGAGATTAGCTGTAGAAAGAGCAATTCGTGAGGCCCGTGAAAGGGCATTTGTAGAAGCCCGAGAGAGGGCTGCTGCTGGGAGAGCTTCTGTTGACACTCGTAGAAGAGTAATGGCTGAGGCACGTGATCGCTCAGGGAAGGTTTCCATAGAGACCAATCATAAGCCTTCTGCCGATAAGGTTTCAAAGGAAGCCAAATTAAAAGCTCAACGTGCTGCTGTTGAAATGGCTACTGCTGAGGCTAGGGAGCGTGCTTTAGAAAAAGCTATGTCTGAGAAGGCTATTTCTGAGGCACGAAATCTTGCTGACAAGATTGTTGCCGAAAAATTACATGGTGCCGCTGGAGATAGCAGAGTAAAAAAGAGTTTTTCATTTAGTGACTCTCAGCCGAAAGGCCCAGGTTCTTCCAACAATTTCAGGCATGCGAATTCATTTAACCTTGGAGGCCCTGACTCTTCAGAGAGAGAGGTGGGATCTTCTGGGGAATCAGCTCAGAGATGTAAAGCCAGGTTGGAGAGGCATCAACGAACCGTTGAGCGTGTGGCAAAAGCTCTTGCAGAGAAGAATATTCGTGATATTCTTGCACAAAAAGAACAGGAAGAGAGAAATAGACTTGCGGAATCTCTAGACGCTGAAGTTAAACGGTGGTCAAGTGGGAAGGAGGGAAATCTGCGTGCATTGCTTTCAACTCTTCAATATATTCTCGGGCCCGACAGTGGGTGGCAGGCAGTCCCTCTAACAGATATCATCACAACCGCTGCTGTCAAGAAAGCTTACCGTAGAGCAACTCTTTCCGTTCATCCTGACAAATTGCAACAACGTGGTGCAACCATTCAACAAAAGTACATATGCGAAAAGGTTTTTGATCTTTTGAAGGCTGCATGGAACAGGTTCAACGTGGAGGAACGATAG 4368 41.19 MEYRASSTVYNKFSNARSFNDKSAYDGVFAAPSKHGAPVFSARVEDYREIFGGSRVSSIPILDVPALSDKKFPVDVRTSKVEYSKIFGGFDELNFAIPYEELLVEANKTTSFSQKTRITAGRGSTAAENSSQYEKESNFSTREASSQPLDRMEKFSVSSQKINQGNKSYATETTHVALPHAIPGFSCVIDQQSPVQMSGTGMPSSEKWNNIRPENIGSTEVADKSELPISGDSEQVFKSSNPTNSQSRTGWFRSDSADKLFNGYEVDQGLQNPDTPPKCNFLPKFGISAGFSGRTTGLKSEAFEHSEDPCDGSSPPYFGEDVEVNPVAAASVAALRKAIDAAQESIKIAKESMERRKTAGLQKHKKAKSSRLNSEEKRGVQTSNNSGTCQEKVAGETCGKVDTLEQVVAEIRRQNSTTECPVTQSAVRENLNASGTNYMEFKMTEVDCREEEGEELDAKEQFYEPRSFGEDEPEEPEPVKEDNADGYEWQENNGLKKTFENPGESGDSLVVVKEAGPEESGINFSVVKGILMSKLKSVLGVVEHEDDKMKCGQNQNQLETNKKVESSMEHEKCVELLEQLKVTKDHEEFVNKEMEEENDTETHVKAHQWVVEEVRHICQQEEKEMETNTVQIENNVEKILDKSNEDERNINLIDDFHDGQDSHDMEESGKLKLSSLQENKQDDEMIEGISFHLFNLKIEHVLRQINIGECGVPEIIVKATLDNRNTESKIELQGGSCKQDEFGKLSEDQEASDFIESMEGVEVIPDQPAYRDTDNSKDVAKISFEVENNESETITEGDMGDRLPFELFSLAEEALKRREFKIRMDDSHTSPILIQNGVDFGVIDIKLGQKYKEALAPEFREIVRNIKEIEFSTNKENDDNNSNEEETFRTVNNMNFESSNEPSTSEDDKKISEEAMEEMVSSIITKATQENYQATIKVEESETDYVLKKEMQLDFDENNNRAGSQSGTIEIDSGIIHMIKTSQSSRESEESYQVTEDEMEASSSSDEEVEYAAHLENLEVNSPGSSGRKENFADIEQEISTSQKVTDNEDHQTTPTLGETETNADMQTREAGVESKFNSETAARGLSQAKEVLEKFAENLANQSILGTGENDQGTHLMEEEKVFHETFEKEAEVIKGRQRKIDEAKEKEKERERLAVERAIREARERAFVEARERAAAGRASVDTRRRVMAEARDRSGKVSIETNHKPSADKVSKEAKLKAQRAAVEMATAEARERALEKAMSEKAISEARNLADKIVAEKLHGAAGDSRVKKSFSFSDSQPKGPGSSNNFRHANSFNLGGPDSSEREVGSSGESAQRCKARLERHQRTVERVAKALAEKNIRDILAQKEQEERNRLAESLDAEVKRWSSGKEGNLRALLSTLQYILGPDSGWQAVPLTDIITTAAVKKAYRRATLSVHPDKLQQRGATIQQKYICEKVFDLLKAAWNRFNVEER 1455
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29093638 29100132 + PI0016537.1 Cmetu04g2517 354961

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 114 160 - -
Cmetu04g2517 1455 FunFam Auxilin-related protein 1 1326 1455 - -
Cmetu04g2517 1455 PANTHER AUXILIN/CYCLIN G-ASSOCIATED KINASE-RELATED 767 1455 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 353 388 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 1273 1302 - -
Cmetu04g2517 1455 Coils Coil 1138 1167 - -
Cmetu04g2517 1455 Coils Coil 1214 1241 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 464 485 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 194 216 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 1040 1076 - -
Cmetu04g2517 1455 Coils Coil 577 597 - -
Cmetu04g2517 1455 Gene3D DnaJ domain 1329 1455 IPR036869 -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 194 251 - -
Cmetu04g2517 1455 Coils Coil 1316 1367 - -
Cmetu04g2517 1455 Coils Coil 332 352 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 890 915 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 232 251 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 1176 1218 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 980 1009 - -
Cmetu04g2517 1455 MobiDBLite consensus disorder prediction 1264 1319 - -
Cmetu04g2517 1455 SUPERFAMILY Chaperone J-domain 1314 1451 IPR036869 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2517 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2517 Cmetu-Chr4:29093638 Cmetu08g0004 Cmetu-Chr8:12434581 8.90E-52 dispersed
Cmetu04g2517 Cmetu-Chr4:29093638 Cmetu08g1509 Cmetu-Chr8:21727677 1.90E-70 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g927 Blo01g01557 . . . Bpe02g00398 . . Bma01g02313 . . Cma01g01899 . Car01g01482 . . . . . . . . . . . . . . . . . . . Cone7ag1817 . . . Csa03g04197 Chy04g00522 . . . . . . . . . Sed13g1633 Cmo01g01963 . . . . . . Cpe02g00135 Bhi09g02158 Tan01g4952 Cmetu04g2517 . Hepe01g1669 Mch11g0172 . Cla05g01952 Cam05g2098 Cec05g2107 Cco05g2163 Clacu05g2090 Cmu05g1966 Cre05g2084 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008012 0 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 8 1 0 35