Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2587 ATGAATTCAAGTCCAAAGACCTGCACCTCTCCATTCACAGCAACTCAATGGCAAGAACTTGAACACCAAGCTCTGATCTTCAAACACATGGTTTCAGGAGTACCAATCCCTCCTGATCTAATCTTCTCTGTCAAAAGAAGCTTGGATTCCTCCATTTCTGCAAGACTCTTTCCTCACCAACCCATTGGATGGGGTTGTTTTGAGATGGGTTTTGGTAGGAAAACAGACCCAGAGCCAGGAAGATGCAGAAGAACAGATGGAAAAAAATGGAGATGTTCAAAAGAAGCTTATCCAGATTCCAAATACTGTGAGAGGCACATGCATAGAGGCAGAAACCGTTCAAGAAAGCCTGTGGAAATCTCTTCAACACCACCAACTCAAAACCCAACTCCTTTAATCCTCACTTCAACCAGAACCCTATCTTCTTCTTCTTCCACTCCAACCTCCTCTTCCTATCCTCTCTCTACACTTTCTTCTTCTTCTTCTTCACTGACTTCTGAAACTCAACCCTATCACCAACCACCTCCTCCTGCTTATCACGAATCCTCCATTCATCCATTTCTGTATTCTCAATCATCCTCCAGAACTCCATGCTCTGATTTCTCTTCAAACAACACAAACCCTCAACTCATCTTGTACTCAGGGACTCATTCTCAAGCTGATAAAGACTACAGGGATATTAGTGGTCCAAGAGAGGGTGTGGGAATGCAGGCGTTCTTTCCCTCAGTTGCAGATTCTGCAAGAAGCATTGCTGAGGTTTATAGTCAGCCAATAGGGATGGATTCTTACAAAGGATGCTCACAATATGTCTCTCAAAGCCATCAAATTTACAGTTCTAAACAGGCAAGGCAACAACAAGAACAACACTGCTTTGTTTGGGCACAGACTTCAATAAATCATCAAGATCAGCTAAAACAGAGGAAGAAGATGAAGATGCAGAAACCCAGAAGCCTCTACTCCACTTCTTTGAGGATTGCCCACCTAAAAACTCAGATTCCTGGCTTGATTTAG 1011 43.13 MNSSPKTCTSPFTATQWQELEHQALIFKHMVSGVPIPPDLIFSVKRSLDSSISARLFPHQPIGWGCFEMGFGRKTDPEPGRCRRTDGKKWRCSKEAYPDSKYCERHMHRGRNRSRKPVEISSTPPTQNPTPLILTSTRTLSSSSSTPTSSSYPLSTLSSSSSSLTSETQPYHQPPPPAYHESSIHPFLYSQSSSRTPCSDFSSNNTNPQLILYSGTHSQADKDYRDISGPREGVGMQAFFPSVADSARSIAEVYSQPIGMDSYKGCSQYVSQSHQIYSSKQARQQQEQHCFVWAQTSINHQDQLKQRKKMKMQKPRSLYSTSLRIAHLKTQIPGLI 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14431815 14434198 - PI0017114.1 Cmetu04g2587 355031

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2587 336 PANTHER GROWTH-REGULATING FACTOR 5 10 260 IPR031137 GO:0005634|GO:0006351|GO:0032502
Cmetu04g2587 336 MobiDBLite consensus disorder prediction 103 183 - -
Cmetu04g2587 336 Pfam WRC 77 119 IPR014977 -
Cmetu04g2587 336 ProSiteProfiles WRC domain profile. 76 120 IPR014977 -
Cmetu04g2587 336 ProSiteProfiles QLQ domain profile. 11 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmetu04g2587 336 MobiDBLite consensus disorder prediction 117 169 - -
Cmetu04g2587 336 SMART QLQ_2 10 46 IPR014978 GO:0005524|GO:0005634|GO:0006355
Cmetu04g2587 336 Pfam QLQ 11 44 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2587 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0320 Cmetu-Chr3:849189 Cmetu04g2587 Cmetu-Chr4:14431815 1.10E-33 dispersed
Cmetu04g2587 Cmetu-Chr4:14431815 Cmetu05g1875 Cmetu-Chr5:125054 3.10E-48 dispersed
Cmetu04g2587 Cmetu-Chr4:14431815 Cmetu02g1264 Cmetu-Chr2:2529126 1.20E-52 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi9g99 Blo05g00042 . Bda04g00930 . . . . . . . Cma01g00034 Cma14g01236 Car01g00027 Car14g01092 . . . Bhi01g02800 Tan04g2799 Cmetu04g2587 Lac12g2484 Hepe02g1533 . . Cla07g01338 Cam07g1156 Cec07g1527 Cco07g1484 Clacu07g1409 Cmu07g1384 Cre07g1767 . . . . . . Chy04g00698 . . . . . . . Bma09g00981 . . Cmo01g00038 Cmo14g01265 . . . . Cpe02g01745 Cpe03g01046 . . . . . . . . . . . . . . Lsi07g00619 . . Cme04g01295
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2587 . 11 110 GRF Transcription Factor Family AT3G13960 80.0 1.9e-49 193.7
Cmetu05g1875 . 3 113 GRF Transcription Factor Family AT3G13960 71.2 7.8e-43 171.8
Cmetu02g1264 . 8 110 GRF Transcription Factor Family AT3G13960 73.8 3.0e-42 169.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007893 1 3 1 1 0 1 2 1 1 1 1 1 2 1 1 2 1 0 2 1 1 1 1 1 1 1 1 2 2 1 36
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7833 PF08879 WRC 1.80E-21 No_clan Cmetu TF