Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2692 ATGAACACACCATCTTCCTTTCCGGACCTCTCCTTGCAGATCAGCCTTCCGATGTCAACACTGCCATGTGAGGCCAAGGTCATCAAGCCACGAAGCTCCACCACCATGGATTCGAGTTCCAGTGGCAAAAGTGATTCGAGCCATGAAAATGGTCTCTTTCACTTAGGGTTTGAGGTGGGAGATTTGGATGTTCCTCCTCCTCGTCGTCCTCACCAAGCTTGTTATAATGTCCGTGACCACCGCGATTACAAAAGAAGCGGAGGCAGAGTCGGGTGTGGAGTAAGAAGAAACATCCGAGCTCCAAGAATGAGATGGACTACAACTCTTCATGCTCATTTTGTACATGCAGTTGAGCTTCTTGGTGGCCATGAAAGAGCTACACCAAAATCAGTATTGGAGCTTATGAATGTCAAGGATCTAACCCTAGCTCACGTCAAAAGTCATTTGCAGATGTACAGAACGGTGAAAAATACTGTGAAGGGAACATCAGATGATTGTGGAAGGCCTGAGGTTGAAGAAGATGGGATGGTTTTATCTTCTTGTGTTAAAAAATCTAACTTTGGATCAAATCATTTCCAGAGAATTCAAAGAAGTAGTTTGGTAACATCAATGCACAAGAGTTGCGACACAGCCAAGTCAAACGCCGACGCTTTCGCTAAATCTATAGGAATTAAGGTTGAAGGAAGAAATGGGGATTATCACGAGGGAATTACAATGCAGAGGATTAATTTAGAGTTCACTCTTGGAAGACCAAGTTGGCAATTGGATTATAGTGATCCAAAGGAGCTTGCCCTTCTCAATTGCTAA 807 43.99 MNTPSSFPDLSLQISLPMSTLPCEAKVIKPRSSTTMDSSSSGKSDSSHENGLFHLGFEVGDLDVPPPRRPHQACYNVRDHRDYKRSGGRVGCGVRRNIRAPRMRWTTTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKNTVKGTSDDCGRPEVEEDGMVLSSCVKKSNFGSNHFQRIQRSSLVTSMHKSCDTAKSNADAFAKSIGIKVEGRNGDYHEGITMQRINLEFTLGRPSWQLDYSDPKELALLNC 268
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 27166827 27170729 - PI0023742.1 Cmetu04g2692 355136

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2692 268 NCBIfam myb-like DNA-binding domain, SHAQKYF class 101 154 IPR006447 GO:0003677
Cmetu04g2692 268 Gene3D - 100 157 - -
Cmetu04g2692 268 FunFam Myb family transcription factor 99 157 - -
Cmetu04g2692 268 Pfam Myb-like DNA-binding domain 102 153 IPR001005 -
Cmetu04g2692 268 MobiDBLite consensus disorder prediction 29 48 - -
Cmetu04g2692 268 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 255 IPR044847 GO:0000976|GO:0006355|GO:0010158
Cmetu04g2692 268 MobiDBLite consensus disorder prediction 31 48 - -
Cmetu04g2692 268 SUPERFAMILY Homeodomain-like 98 155 IPR009057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2692 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0697 Cmetu-Chr3:1619925 Cmetu04g2692 Cmetu-Chr4:27166827 1.90E-18 dispersed
Cmetu04g2692 Cmetu-Chr4:27166827 Cmetu12g0079 Cmetu-Chr12:1697126 6.30E-28 dispersed
Cmetu04g2692 Cmetu-Chr4:27166827 Cmetu06g1976 Cmetu-Chr6:29909760 9.70E-29 transposed
Cmetu04g2692 Cmetu-Chr4:27166827 Cmetu06g1509 Cmetu-Chr6:11051163 9.70E-29 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g841 . Blo12g00936 . . . . . . Cmo05g00220 Cmo12g00449 . Cma09g00194 . Car12g00477 Sed01g2622 Cpe06g00132 Cpe07g00452 Bhi04g00296 Tan02g1912 Cmetu04g2692 . Hepe10g0690 . Lcy13g2020 Cla08g01528 Cam08g2020 Cec08g1594 Cco08g1731 Clacu08g1709 . Cre08g1490 Cone4ag1544 Cone7ag1407 Cone17ag1309 Cone20ag0163 Lsi04g01607 Csa03g04154 Chy04g00565 Cme03g01993 . Blo18g00828 . Bda01g01484 Bpe02g01679 . Bma01g00775 . . . Cmo09g00190 Cma12g00506 Cma05g00213 Car05g00175 Car09g00164 Cpe11g00176 Cpe02g00150 Bhi09g02029 . . . . Mch11g0241 . Cla05g01991 Cam05g2142 Cec05g2157 Cco05g2205 Clacu05g2133 Cmu05g2006 Cre05g2130 Lsi08g01429 Csa02g02010 Chy03g01499 Cme04g00674
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008523 1 1 2 1 1 1 2 1 1 1 1 1 1 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 1 35
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7842 PF00249 Myb_DNA-binding 1.20E-05 CL0123 Cmetu TF