Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2777 ATGCAGGAGAAGCTTGAGGTAGTTGAAGGAAAAGTGGACTGGAAGGGAAGATTGGCTTACAAACACAAGCATGGAGGAACTAAATCTTCTTTGCTCATACTAGTTGCATTTGGTTTCGAGAGCATGGCGAACTTTGCGCTTGCAGTAAACTTGATTACATATTTCAATTCTGTGATGCACTTTGAACTAGCAGATGCTGCCAATCAGTTGACGAATTACATGGGTACTGGTTACATTCTCTCTATTTTGATGGCCATTCTCGCAGACACATACTTCGGCAGAGTCAAAACCGTCATAATTTCTAGCTGCTTCGAGTTTCTGGCGCTAATCTTGCTCATGATACAAGCTCACTACCCGAAGCTCAAGCCACCACCTTGCAATATGTTTGATAAACAATCCCATTGTGAGACAGTTGAAGGAAAAAGTGCTGCCCTGCTCTATGTTGCTCTCTACATATTGGCCATTGGTACTGCAGGCATTAAGGCTGCATTACCATCACATGGTGCTGATCAATTCGATGAAAAAGATCCCAAGGAGGCAATGCAAATGTCCAGCTTCTTCAACAAACTCTTGCTAGGACTGTGCCTCGGTGGTGCTGTTAGTTTAACTCTAATTGTTTGGATCCAAGACTACAAAGGTTGGGACTGGGGTTTAGGGGTATCTTCGGCAGCCATGTTCTTTAGTGTTGTCATCTTTGTTGCCGGATTGCCACTGTACCGAATGCATATTGTTTCTGGATCTAGTACAATCCTCCAAATTCTACAAGTATACGTTGCAGCCATCCGTAATAGAAAACTTATTCTCCCTGAAGACTCTACGCATCTTTATGAAATAGAAAGGGACAAGGAGGCTGCTGTGGAAGACGACTTTCTGCCACATAGAAATATTTACAGGTTTTTGGACAAGGCGGCAATTCAACAAACACCTTCTAGGCAAGTTGAAAACCCCGAAGCTTCAAGTCCATGGAAACTATGCACAGTCACCCAAGTAGAGAATGCAAAAATAGTTCTCAGCATGGTACCGATTTTCTGTTGCACAATCATAATGACCCTTTGCTTGGCTCAGCTCCAAACCTTCTCCATCCAACAGGGCCTTACCATGGATACAAAACTCACCAACTCTTTCAGCATCCCTCCGGCTTCACTCCCCATTATCCCAGTCTCCTTCATCATCCTCATAGTCCCAATCTACGACAAGATTTTCGTCCCCTTTGCTCGAAAGCTCACTGGGATCCCAACAGGAATCACCCACTTGCAACGAGTAGGTGTTGGATTGGTCCTATCAAGCATTTCCATGGCCGTCGCGGCATTAGTGGAAGTGAAGCGCAAAGGCGTAGCGAGAGACCACAATATGCTGGACGCAACCCCTGTTCTGCAGCCATTGCCAATCAGCACATTCTGGCTATCTTTTCAATTCTTCATATTCGGAATCGCTGATCTGTTTACATATGTAGGGCTTCTCGAGTTCTTCTACTCCGAGGCGCCGAAAGCCTTGAAATCTGTATCTACATGCTTCCTTTGGAGTTCGATGGCGTTGGGATACTTCATGAGCACCATAATTGTGAAGATTGTGAACAGGGCTACGGAAGGAATTACGAGAAGTGGAGGTTGGTTGATAGGAAACAACATAAATCGGAATCATTTGAACCTCTTCTACTGGATGCTTTCAATCTTGAGCTTGATCAACTTCTTTATCTATGTATTTGTTGCAAAGAAATACAAGTACAGAAACCAGAAACCCGCCGTCTCCAATGCCGTTGATGACAGTAGGACGCCATAA 1779 44.41 MQEKLEVVEGKVDWKGRLAYKHKHGGTKSSLLILVAFGFESMANFALAVNLITYFNSVMHFELADAANQLTNYMGTGYILSILMAILADTYFGRVKTVIISSCFEFLALILLMIQAHYPKLKPPPCNMFDKQSHCETVEGKSAALLYVALYILAIGTAGIKAALPSHGADQFDEKDPKEAMQMSSFFNKLLLGLCLGGAVSLTLIVWIQDYKGWDWGLGVSSAAMFFSVVIFVAGLPLYRMHIVSGSSTILQILQVYVAAIRNRKLILPEDSTHLYEIERDKEAAVEDDFLPHRNIYRFLDKAAIQQTPSRQVENPEASSPWKLCTVTQVENAKIVLSMVPIFCCTIIMTLCLAQLQTFSIQQGLTMDTKLTNSFSIPPASLPIIPVSFIILIVPIYDKIFVPFARKLTGIPTGITHLQRVGVGLVLSSISMAVAALVEVKRKGVARDHNMLDATPVLQPLPISTFWLSFQFFIFGIADLFTYVGLLEFFYSEAPKALKSVSTCFLWSSMALGYFMSTIIVKIVNRATEGITRSGGWLIGNNINRNHLNLFYWMLSILSLINFFIYVFVAKKYKYRNQKPAVSNAVDDSRTP 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1485257 1487480 - PI0025778.1 Cmetu04g2777 355221

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2777 592 PANTHER OLIGOPEPTIDE TRANSPORTER-RELATED 25 575 - -
Cmetu04g2777 592 Gene3D MFS general substrate transporter like domains 1 582 IPR036259 -
Cmetu04g2777 592 Pfam POT family 96 530 IPR000109 GO:0016020|GO:0022857|GO:0055085
Cmetu04g2777 592 SUPERFAMILY MFS general substrate transporter 28 577 IPR036259 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2777 K26548 - - csv:101217638 919.457
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1912 Cmetu-Chr3:1589782 Cmetu04g2777 Cmetu-Chr4:1485257 9.10E-134 dispersed
Cmetu03g2066 Cmetu-Chr3:6761478 Cmetu04g2777 Cmetu-Chr4:1485257 5.10E-91 dispersed
Cmetu04g2777 Cmetu-Chr4:1485257 Cmetu05g0704 Cmetu-Chr5:4277957 7.90E-132 dispersed
Cmetu04g2777 Cmetu-Chr4:1485257 Cmetu02g0258 Cmetu-Chr2:23834045 9.70E-122 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g500 . . . . . . . . . . . Cma11g00164 . Car11g00136 Sed14g1540 . Cpe04g01516 Bhi02g00348 Tan09g2161 Cmetu04g2777 . Hepe09g0138 . . . . . . . . . . . Cone13ag0087 Cone19ag0089 . . . . . . . . . . . . . . Cmo11g00146 . . . . . . . . . . . . . . . . . . . . Lsi06g01486 Csa01g00214 Chy02g02518 Cme02g01905
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010034 0 2 1 0 1 1 2 1 1 1 0 1 2 1 1 2 1 3 1 1 1 1 1 1 1 1 1 0 1 1 32