Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2809 ATGTCCCTCCTTAGTAGATTCTTTTACCGAAGACCTCCAGATGGGTTGCTGGAATTTGTTGAACGAGTCTATATTTTTGATTCGTGTTTTTCGACTGAAGCTTTGCCTGATGGTATGTACCAAATATATCTGCATGAAATCATTAATGAATTACATGAAGAATTCCCGGACTCTTCCTTCCTTGCGTTTAATTTTCGTGAAGGGGAGAAAAGGAGCCAATTTGCAGAAATGTTGTGTGCGTATGATGTCACTGTCATGGATTATCCTCGACAATATGAAGGTTGTCCTCTTCTTCCACTGTCGTTGATTCAGCACTTCCTCCGTGTTTGTGAAAGTTGGCTTTTGCTTGGTAACCAACAGAATGTTATTCTTCTTCACTGTGAGAGGGGAGGTTGGCCTCTCTTAGCATTCCTTTTGGCTAGCTTTTTGATATTTAGAAAAATGCACAGTGGCGAGAGGAAAACTCTTGAAATTGTACATCGAGAAGCTCCCAAAGGGTTTTTGCAGCTCTTGTCACCACTAAATCCATTTCCATCTCAGCTCCGCTACTTGCAATATGTTGCAAGGAGAAATATAGTCTCTGAGTGGCCACCACCTGAGCGAGCACTCTCTTTAGATTGTGTAATTCTTCGTGGCGTTCCAGGTTTTGATGCTCAGAATGGCTGCAGACCAGTCATTCGTATTTTTGGAAGGAATCTTTTTAGTAAGGGTGGGCTTTCCACGCAGATGCTTTTCTCTATGCCCAAGAAGAACAAGGCCCTCCGTCACTACCATCAGGCAGACTGTGATGTGATTAAAATAGACGTGCAGTGTTTGGTTCAAGGAGATGTAGTGTTGGAGTGTTCACATTTGGAATCGGAACCAGAAAGAGAAGTTATGATGTTTCGTATTATGTTCAATACAGCATTTATTAGATCAAACATACTGATGCTAACCTCTGACAATTTGGATATTCTTTGGGATTCAAAGGAGCGTTATCCAAAAGGCTTTCGAGCTGAGGTTTTGTTTGGGGAGATGGAAAACATCTCCCCTCCAAGGGCTCCAACCTCCATTTTGAATGGCGAAGAGAAAGGTGGATTGCCAATTGAAGCTTTTTCCAGGGTTCAAGAACTTTTTAGTGGTGTCGAGTGGATTGATAACAACGATGATGCTGCCTTTGATGTGAAAGAATTGTCAAGATTGCAAAATAAAACAAGTTCATACTCCTCACCAGTAGATTCTGAAGAGGAAAATAATACATCTAGCACTGCTGATAGTTCAGATGAAGTGTTTGATATTATTACAAAGCCTTTTTTGGATCCAACTTCTACCAACTTTACAATCTCGGCCACGGTACATTCTTCTGAATTATGGTCTGACAAGATTGGTGCCAATGAAGTGAATATTTCATCAGAGTCTCCTCAATCTTCTGATGAATTTCAAGACAAGATATTTTCAAATAAAGAACCTTTACCCTCTTCATCACCTCTGTTGCCTCCATCTAATCTACCATCTACCGATGCTAGTGGGAAACTTGACTCAAATAAAATGACACCCACTGTTAAAGTGATTCCTCCACCACCACCGCCGCCACCTTTTTCTCTATCACATAACAAGCCTCATGTAGAAAGTTCCTCTAGTTCAGATTCGACCACTCTAACAATGCTTGGGAGACCCCCTGCACCTCCTCCATCTCCACCTCAGTATCCTACTATTAACAATCCTGTTACAACCTCGACTTATTCACTTTCAAATGTTCCTAAATCTTCTGGTGCACCCCCACCACCACCCCCACCTCCTCCTTTTGTTCCAAAATCTTCTGGTGCTCCTCCACCTCCGCCTCCACCCCCAATTGCAAATTCTTCTGGTGCTCCCCCGCCTCCGCCCCCGCCCCCTCCAGCAGTTCTGAAATCTTCTAATGCTCCTCCACCTCCACCTCCGCCTCCACCCCCACCTATAGTTCCAAAATCTTCTAGTGTTCCTCCGCCTCCGCCTCCAGTTTCAAAATCTCCTAGTGCTCCTCCACCTCCACCTCCACCTCCACCTCCACCTCTAAAATCTTCTAGTGCTCCCCCACCTCCTCCGCCTCCACCTCTAAAATCTTCTAGTGCCCCCCCACCTCCTCCGCCTCCACCTCTAAAATTTTCTAGTGCTCCTCCATCTCCTCCTCCGCCTCTAAAATCTTCTAGTGCTCCTCCACCTCCACCTCCTCCGTTTCTAAAATCTTCTAGTGCTCCTCCACCTCCTCCTCCACCTCCATTTCCAAAGCTTTTTGGTGCTCCTCCACCCCCACCTCCACCTCCTCCACAATCAAATCATGGTGCACCAGTTCCACCTCCTCCACCACCGAAACCTCCCAGTGTTGAGCTGCCAAGTCATGGTGCTAAATCAAATAGACCTCCTCCACCTCCTCCACCAGCAAAGCCCTTCAATGTTAATCCTCTGGCAAGTCAAGGTGCTACACCAATGCCACCCCCTCCTCCCGGATCAAGAGGATCAAATGTACCACCACCGCCGCCGCCTTCTGCTGGAAGAGGCAAAGCTTCTCTAGGATCAACAACTCAAGGAAGAGGCCGAGTTGCCACAGGAGTTGTAAATGCTCCAAAAAAAACCACCTTAAAACCATTACACTGGGTGAAAGTTACTCGAGCAATGCAAGGGAGTTTATGGGCTGACTCACAAAAGCAGGAAAATCAGTCAAGGGCCCCAGAAATAGACATCTCTGAACTTGAAAGTCTATTCTCAGCAGCTTCTGCTTCTGATGGAAGTGGCAGTAAAGGTGGAGGACGACGTGGTTCCAACATTAACAAACCTGAAAAAGTGCAACTGATTGACCTGCGGAGAGCATATAACTGTGAAATAATGCTCTCAAAAATAAAGATTCCCTTACCGGATATGATAAATTCAGTTCTTGCATTGGATTCTTCTGCTCTTGATATTGACCAGGTTGAGAATCTCATCAAGTTTTGTCCTACTAGGGAAGAGATGGAAACGTTGAAGAGTTATACAGGTGACAGAGAAATGCTTGGAAAATGTGAGCAGTTTTTTCTCGAGCTAATGAAGGTCCCACGAATAGAGTCCAAGTTACGAGTATTTGCTTTCAAAATCACCTTTTCTAGTCAGGTGAATGATTTGAGATATCATTTGAACACAATAAATGATGCTACAAGAGAGGTCAAAGAATCTGCAAAATTGCGTCAGATTATGCAAACTATTCTTACACTGGGAAATGCGTTAAACCAGGGTACTGCTCGAGGCTCAGCTATAGGTTTTAAGTTGGACAGCCTCCTTAAATTGTCTGACACTCGGGCAAGAAACAACAAAATGACTTTGATGCATTATTTATGTAAGCTCATTGCAGAGAAAATGCCAGAGTTACTTGATTTTGACAAGGACCTTGTTCATTTAGAAGCTGCCTCTAAGATTCAACTGAAAGCATTGGCTGAGGAAATGCAAGCAGTGAGTAAAGGTCTTGAAAAGGTGGAGCAAGAGCTAACTGCCTCAGAAAACGACGGTGCTATCTCTGTTGGTTTCCAAAAGGTGCTGAAGGATTTTCTTGATACGGCTGAAGCTGAAGTAAGGGCACTTATCTCCTTATATTCTGAAGTGGGGAGAAATGCGGATTCTCTATCACAGTACTTTGGCGAGGATCCAGCTCGGTGCCCTTTTGAGCAAGTGACTCAAATTTTGATAGTCTTCGTTAAGATGTTCAAGAAGTCACGAGAAGAAAATGAAAGGCAGGCTGATGCTGAAAAGAAAAAAATAGAGAAGGAAGCCATGAGAGAAAGAAGTTCAGTTAAAGCAAAGTGA 3789 44.18 MSLLSRFFYRRPPDGLLEFVERVYIFDSCFSTEALPDGMYQIYLHEIINELHEEFPDSSFLAFNFREGEKRSQFAEMLCAYDVTVMDYPRQYEGCPLLPLSLIQHFLRVCESWLLLGNQQNVILLHCERGGWPLLAFLLASFLIFRKMHSGERKTLEIVHREAPKGFLQLLSPLNPFPSQLRYLQYVARRNIVSEWPPPERALSLDCVILRGVPGFDAQNGCRPVIRIFGRNLFSKGGLSTQMLFSMPKKNKALRHYHQADCDVIKIDVQCLVQGDVVLECSHLESEPEREVMMFRIMFNTAFIRSNILMLTSDNLDILWDSKERYPKGFRAEVLFGEMENISPPRAPTSILNGEEKGGLPIEAFSRVQELFSGVEWIDNNDDAAFDVKELSRLQNKTSSYSSPVDSEEENNTSSTADSSDEVFDIITKPFLDPTSTNFTISATVHSSELWSDKIGANEVNISSESPQSSDEFQDKIFSNKEPLPSSSPLLPPSNLPSTDASGKLDSNKMTPTVKVIPPPPPPPPFSLSHNKPHVESSSSSDSTTLTMLGRPPAPPPSPPQYPTINNPVTTSTYSLSNVPKSSGAPPPPPPPPPFVPKSSGAPPPPPPPPIANSSGAPPPPPPPPPAVLKSSNAPPPPPPPPPPPIVPKSSSVPPPPPPVSKSPSAPPPPPPPPPPPLKSSSAPPPPPPPPLKSSSAPPPPPPPPLKFSSAPPSPPPPLKSSSAPPPPPPPFLKSSSAPPPPPPPPFPKLFGAPPPPPPPPPQSNHGAPVPPPPPPKPPSVELPSHGAKSNRPPPPPPPAKPFNVNPLASQGATPMPPPPPGSRGSNVPPPPPPSAGRGKASLGSTTQGRGRVATGVVNAPKKTTLKPLHWVKVTRAMQGSLWADSQKQENQSRAPEIDISELESLFSAASASDGSGSKGGGRRGSNINKPEKVQLIDLRRAYNCEIMLSKIKIPLPDMINSVLALDSSALDIDQVENLIKFCPTREEMETLKSYTGDREMLGKCEQFFLELMKVPRIESKLRVFAFKITFSSQVNDLRYHLNTINDATREVKESAKLRQIMQTILTLGNALNQGTARGSAIGFKLDSLLKLSDTRARNNKMTLMHYLCKLIAEKMPELLDFDKDLVHLEAASKIQLKALAEEMQAVSKGLEKVEQELTASENDGAISVGFQKVLKDFLDTAEAEVRALISLYSEVGRNADSLSQYFGEDPARCPFEQVTQILIVFVKMFKKSREENERQADAEKKKIEKEAMRERSSVKAK 1262
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 16880725 16889976 + PI0001249.1 Cmetu04g2809 355253

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 514 529 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 1233 1262 - -
Cmetu04g2809 1262 SMART it6_source 486 1262 IPR015425 -
Cmetu04g2809 1262 Pfam C2 domain of PTEN tumour-suppressor protein 199 337 IPR014020 -
Cmetu04g2809 1262 Coils Coil 1231 1254 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 909 923 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 582 782 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 812 837 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 550 564 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 478 861 - -
Cmetu04g2809 1262 SMART PTEN_C2_2 198 338 IPR014020 -
Cmetu04g2809 1262 FunFam Formin-like protein 855 1242 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 565 581 - -
Cmetu04g2809 1262 Gene3D Formin, FH2 domain 858 1242 IPR042201 -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 493 509 - -
Cmetu04g2809 1262 Pfam Formin Homology 2 Domain 861 1231 IPR015425 -
Cmetu04g2809 1262 Gene3D - 197 342 - -
Cmetu04g2809 1262 ProSiteProfiles Formin homology-2 (FH2) domain profile. 856 1256 IPR015425 -
Cmetu04g2809 1262 Coils Coil 1137 1164 - -
Cmetu04g2809 1262 SUPERFAMILY Formin homology 2 domain (FH2 domain) 931 1256 - -
Cmetu04g2809 1262 Gene3D Protein tyrosine phosphatase superfamily 16 191 IPR029021 -
Cmetu04g2809 1262 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 20 187 IPR029021 -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 531 548 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 789 804 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 397 420 - -
Cmetu04g2809 1262 MobiDBLite consensus disorder prediction 909 929 - -
Cmetu04g2809 1262 PANTHER FORMIN-J 754 1256 - -
Cmetu04g2809 1262 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 200 339 IPR035892 -
Cmetu04g2809 1262 ProSiteProfiles C2 tensin-type domain profile. 200 339 IPR014020 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2809 K28090 - - csv:101217517 1070.07
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1753 Cmetu-Chr2:20671258 Cmetu04g2809 Cmetu-Chr4:16880725 7.00E-231 dispersed
Cmetu04g2809 Cmetu-Chr4:16880725 Cmetu07g0822 Cmetu-Chr7:23966090 5.80E-257 dispersed
Cmetu11g1515 Cmetu-Chr11:23572744 Cmetu04g2809 Cmetu-Chr4:16880725 2.10E-25 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1209 . 465 941 FH2 protein (formin) Gene Family AT3G25500 65.8 1.1e-163 574.7
Cmetu11g1138 . 413 838 FH2 protein (formin) Gene Family AT3G25500 53.9 3.5e-122 436.8
Cmetu02g0328 . 500 893 FH2 protein (formin) Gene Family AT3G25500 51.5 6.8e-102 369.4
Cmetu04g2000 . 624 833 FH2 protein (formin) Gene Family AT2G43800 64.8 3.0e-66 250.8
Cmetu11g1515 . 320 621 FH2 protein (formin) Gene Family AT4G15200 56.5 2.0e-53 207.2
Cmetu11g1515 . 475 938 FH2 protein (formin) Gene Family AT5G54650 63.9 2.5e-161 566.6
Cmetu11g1138 . 33 857 FH2 protein (formin) Gene Family AT5G67470 53.9 1.1e-212 737.3
Cmetu10g1209 . 503 937 FH2 protein (formin) Gene Family AT5G67470 61.0 3.1e-127 453.4
Cmetu02g0328 . 500 895 FH2 protein (formin) Gene Family AT5G67470 51.1 5.6e-105 379.4
Cmetu04g2000 . 611 825 FH2 protein (formin) Gene Family AT5G67470 61.5 5.7e-65 246.5
Cmetu10g0982 . 338 830 FH2 protein (formin) Gene Family AT1G59910 51.4 6.6e-125 445.7
Cmetu04g2000 . 651 833 FH2 protein (formin) Gene Family AT5G48360 54.1 1.3e-46 185.3
Cmetu04g2000 . 623 825 FH2 protein (formin) Gene Family AT3G07540 50.2 7.7e-48 189.5
Cmetu04g2809 . 942 1253 FH2 protein (formin) Gene Family AT1G42980 51.4 7.4e-70 261.2
Cmetu04g2809 . 1 1260 FH2 protein (formin) Gene Family AT1G31810 68.4 0.0e+00 1203.7
Cmetu02g1238 . 915 1222 FH2 protein (formin) Gene Family AT5G07650 70.8 8.1e-116 415.2
Cmetu07g0822 . 1067 1389 FH2 protein (formin) Gene Family AT5G07650 64.7 3.5e-111 399.8
Cmetu04g2809 . 926 1257 FH2 protein (formin) Gene Family AT5G07650 59.9 1.3e-108 391.3
Cmetu02g1753 . 919 1231 FH2 protein (formin) Gene Family AT5G07650 61.4 2.4e-104 377.1
Cmetu12g0477 . 984 1241 FH2 protein (formin) Gene Family AT5G07650 71.7 1.6e-100 364.4
Cmetu02g1238 . 842 1215 FH2 protein (formin) Gene Family AT5G07770 65.3 4.9e-126 448.7
Cmetu07g0822 . 992 1381 FH2 protein (formin) Gene Family AT5G07770 59.3 6.9e-120 428.3
Cmetu04g2809 . 862 1251 FH2 protein (formin) Gene Family AT5G07770 56.0 2.1e-116 416.8
Cmetu02g1753 . 842 1223 FH2 protein (formin) Gene Family AT5G07770 56.7 4.0e-112 402.5
Cmetu12g0477 . 907 1245 FH2 protein (formin) Gene Family AT5G07770 63.5 7.6e-111 398.3
Cmetu07g0822 . 966 1392 FH2 protein (formin) Gene Family AT3G32400 73.1 8.0e-170 594.0
Cmetu02g1753 . 849 1232 FH2 protein (formin) Gene Family AT3G32400 67.7 1.4e-142 503.4
Cmetu04g2809 . 862 1256 FH2 protein (formin) Gene Family AT3G32400 66.0 1.6e-141 500.0
Cmetu02g1238 . 842 1222 FH2 protein (formin) Gene Family AT3G32400 64.0 7.3e-131 464.5
Cmetu12g0477 . 877 1241 FH2 protein (formin) Gene Family AT3G32400 57.1 1.9e-110 396.7
Cmetu07g0822 . 1 1392 FH2 protein (formin) Gene Family AT2G25050 52.3 0.0e+00 1171.0
Cmetu02g1238 . 843 1222 FH2 protein (formin) Gene Family AT5G07780 60.0 3.0e-110 396.0
Cmetu07g0822 . 993 1382 FH2 protein (formin) Gene Family AT5G07780 54.6 5.8e-106 381.7
Cmetu04g2809 . 863 1252 FH2 protein (formin) Gene Family AT5G07780 52.7 4.6e-103 372.1
Cmetu12g0477 . 908 1240 FH2 protein (formin) Gene Family AT5G07780 57.3 9.0e-99 357.8
Cmetu02g1753 . 849 1223 FH2 protein (formin) Gene Family AT5G07780 52.8 2.5e-96 349.7
Cmetu02g1238 . 914 1229 FH2 protein (formin) Gene Family AT5G07760 70.2 3.7e-114 409.8
Cmetu07g0822 . 1066 1389 FH2 protein (formin) Gene Family AT5G07760 66.2 2.3e-111 400.6
Cmetu04g2809 . 936 1257 FH2 protein (formin) Gene Family AT5G07760 61.3 9.8e-107 385.2
Cmetu02g1753 . 918 1231 FH2 protein (formin) Gene Family AT5G07760 63.5 3.2e-105 380.2
Cmetu12g0477 . 983 1241 FH2 protein (formin) Gene Family AT5G07760 72.2 1.4e-100 364.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010762 0 1 1 0 0 1 2 1 1 1 1 1 2 1 1 1 1 2 2 1 1 1 1 1 1 0 1 1 3 1 32