Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2861 ATGGTTTCTAAGATCATCAAAAGATCCCCCACCAACCCCTTCCGCCGCCACCGCCGCAAGTCTCCGATCAAGAATGCCTCCTCCGCTGTCGTTGCCACCATCAACCGCTCTCTCTACACCTGCCACCGCCGTCTTCTCAAGATCTTCTCCAAGTTGGCCCGTATCAGCACTCCCAACCGCCACAAAGGCTACAAATCATTGAGAAAAACCAACTCTTCCTCCTCTGAATCCGACATTGTCCGAACCCTAGTCTTCGACAACCGTCTACTCCCTCCTCTCATTTCCCCGGCCAAACGGACCGTTCTCCTCGACCTAGACGAGACTCTGGTTCATTCAAAACTCGATCCACCGCCAGAGAAGTTCGATTTTGTAGTTAGGCCGAGGATCGACGGCGAAATACTCAACTTCTACGTGCTGAAACGCCCTGGTGTGGATCAATTTCTTGAAGCCCTAGCGGATAAATTCGAAATCGTGGTGTTCACAGCGGGATTGAAGGAATACGCGTCGCTTGTGTTGAACCATTTGGACAAGAAATCGGTGATTTCGCACAGATTGTATCGCGATTCTTGTAAGGAGGTGGAGGGGAAATATGTGAAGGATTTGTCTGAAATCGGGAGGGATCTGAGAAGAGTGGTGATTGTGGATGATAATCCAAATGCTTACGTTTTTCAACCGGAAAATGCGATTCCGATTCCGTCGTTCGTCGATGATCCGGCGGATATGGAGCTTCGGAAATTGGTAAGGTTCTTTGAGGTATGTGATTGTTACGATGATATGAGAGATGCTGTGAAGCAGTATCTGAGTAGAGAAGAAATCTGA 819 48.84 MVSKIIKRSPTNPFRRHRRKSPIKNASSAVVATINRSLYTCHRRLLKIFSKLARISTPNRHKGYKSLRKTNSSSSESDIVRTLVFDNRLLPPLISPAKRTVLLDLDETLVHSKLDPPPEKFDFVVRPRIDGEILNFYVLKRPGVDQFLEALADKFEIVVFTAGLKEYASLVLNHLDKKSVISHRLYRDSCKEVEGKYVKDLSEIGRDLRRVVIVDDNPNAYVFQPENAIPIPSFVDDPADMELRKLVRFFEVCDCYDDMRDAVKQYLSREEI 272
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1515962 1516832 + PI0019696.1 Cmetu04g2861 355305

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2861 272 Gene3D - 87 266 IPR023214 -
Cmetu04g2861 272 CDD HAD_FCP1-like 98 231 - -
Cmetu04g2861 272 MobiDBLite consensus disorder prediction 1 22 - -
Cmetu04g2861 272 NCBIfam dullard-like phosphatase domain 98 262 IPR011948 GO:0016791
Cmetu04g2861 272 PANTHER DULLARD PROTEIN PHOSPHATASE 40 265 - -
Cmetu04g2861 272 ProSiteProfiles FCP1 homology domain profile. 94 253 IPR004274 -
Cmetu04g2861 272 SMART forpap2 97 241 IPR004274 -
Cmetu04g2861 272 Pfam NLI interacting factor-like phosphatase 100 260 IPR004274 -
Cmetu04g2861 272 SUPERFAMILY HAD-like 91 264 IPR036412 -
Cmetu04g2861 272 FunFam NLI interacting factor-like phosphatase family protein 87 268 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2861 K15731 - - csv:101206664 519.62
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1982 Cmetu-Chr1:13148126 Cmetu04g2861 Cmetu-Chr4:1515962 1.50E-14 dispersed
Cmetu04g0354 Cmetu-Chr4:1345558 Cmetu04g2861 Cmetu-Chr4:1515962 3.80E-31 dispersed
Cmetu04g2861 Cmetu-Chr4:1515962 Cmetu10g0943 Cmetu-Chr10:14701972 1.20E-18 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g47 . . . . . . . . Cmo05g00116 Cmo12g00562 . Cma05g00110 . Car12g00572 Sed14g1534 Cpe07g00545 . Bhi04g00482 Tan02g2217 Cmetu04g2861 . Hepe08g1373 . Lcy13g2168 . . . . . . . . . Cone17ag0911 Cone20ag0254 . . . . . . . . . . . . . . . . Cma12g00625 . Car05g00095 Cpe11g00090 . . . . . . . . . . . . . . . Lsi08g01564 Csa02g01857 Chy03g01628 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010524 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 1 1 0 30