Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g2908 ATGGCTAGCTATGTGGGTAAAGGAGCCCCCTCAAATGGGTCTATTTACATCTGCAACCTGCCGTATGGGACAGATGAGAATATGCTTGCTGAGTATTTTGGGACAATTGGGGTATTAAAGAAAGACAAGCGAACAGGTAGACCAAAGATTTGGTTGTATCGTGATAAATCAACGAATGAACCTAAAGGAGATGCTACTGTAACATATGAGGATCCACATGCAGCTTTAGCGGCTGTTGAATGGTTTAACAATAAGGATTTTCATGGTAGCATTATTGAAGTTCATATAGCAGAGTCCAAAAGTAAGGATGATATTTCATTTAATGTGGGGGTGGAACCAATTGTTGCTGCTGGTGATGATATTGGTTTTGAGGAAAATGCTGCGGGTATGAACGGTGGCGGTGGAAGGGGGAGAGGTCGTGGTGATGCTCCAGGAAAAGCATGGCAACAAGAGGGAGATTGGCTGTGTCCAAATACAAGTTGTTCCAATGTTAATTTTGCATTTCGTGGTGTGTGCAATCGATGTGGAAGTGCTCGACCTTCTGGTGCTGCTGGTAGTGGTGCAGGCTCTATAGGCCGTGGCAGGGGCCGTGGCACTAGCAACCAGGACTCTGGAGGCAATAGTCGTCAAGTTGGTGGCCCTACTGGGCTCTTTGGTCCAAATGATTGGCCTTGTCCAATGTGTGGTAACATTAATTGGGCAAAGCGTACAAAATGCAATATTTGTAATACAAACAAACCTGGTCATAACGAGGGTGGTGTGAGAGGAGGGCGTGGTGGAGGTTACAAAGAACTTGATGAAGAAGAGTTGGAGGAGACTAAACGACGGCGACGAGAAGCTGAAGAAGATGATGGAGAGATGTATGATGAGTTTGGAAACCTTAAGAAGAAGTTTCGTGCCAAATCCCAGCAAATGGAAGCCGGTCGGATACTACCAGGTGCTGGGCGGGCTGGATGGGAAGTTGAGGAACTAGGTGTAGTTGAGAAAGATAGGAGGGAGAGAAGTAGAGACCGAGGAAGGGACTGGGATGACCGAGATGGCAGCAGAAATAGAGAAAGAGAAAGCAGGGAAAGACATCGGAGTCGAAGTAGGGAGCGAGATAGGGGAAGAGATCGTGATCGAGATTACGAGTACGAGCGAGATAGAGAATATGGGAGGGACAAGGACCACCGGAACAGACACCGATACTGA 1191 47.1 MASYVGKGAPSNGSIYICNLPYGTDENMLAEYFGTIGVLKKDKRTGRPKIWLYRDKSTNEPKGDATVTYEDPHAALAAVEWFNNKDFHGSIIEVHIAESKSKDDISFNVGVEPIVAAGDDIGFEENAAGMNGGGGRGRGRGDAPGKAWQQEGDWLCPNTSCSNVNFAFRGVCNRCGSARPSGAAGSGAGSIGRGRGRGTSNQDSGGNSRQVGGPTGLFGPNDWPCPMCGNINWAKRTKCNICNTNKPGHNEGGVRGGRGGGYKELDEEELEETKRRRREAEEDDGEMYDEFGNLKKKFRAKSQQMEAGRILPGAGRAGWEVEELGVVEKDRRERSRDRGRDWDDRDGSRNRERESRERHRSRSRERDRGRDRDRDYEYERDREYGRDKDHRNRHRY 396
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 8370744 8375217 - PI0011962.1 Cmetu04g2908 355352

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g2908 396 FunFam TATA-binding protein-associated factor 2N isoform X1 148 182 - -
Cmetu04g2908 396 Coils Coil 263 283 - -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 129 148 - -
Cmetu04g2908 396 FunFam HIV Tat-specific factor 1 12 96 - -
Cmetu04g2908 396 ProSiteProfiles Zinc finger RanBP2 type profile. 150 181 IPR001876 -
Cmetu04g2908 396 ProSitePatterns Zinc finger RanBP2-type signature. 154 175 IPR001876 -
Cmetu04g2908 396 SMART zf_4 221 245 IPR001876 -
Cmetu04g2908 396 SMART zf_4 152 178 IPR001876 -
Cmetu04g2908 396 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 15 91 IPR000504 GO:0003723
Cmetu04g2908 396 SUPERFAMILY Ran binding protein zinc finger-like 211 249 IPR036443 -
Cmetu04g2908 396 FunFam Zinc finger Ran-binding domain-containing protein 2 214 248 - -
Cmetu04g2908 396 SUPERFAMILY RNA-binding domain, RBD 10 102 IPR035979 GO:0003676
Cmetu04g2908 396 Pfam Zn-finger in Ran binding protein and others 222 248 IPR001876 -
Cmetu04g2908 396 Pfam Zn-finger in Ran binding protein and others 151 181 IPR001876 -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 260 287 - -
Cmetu04g2908 396 SUPERFAMILY Ran binding protein zinc finger-like 145 182 IPR036443 -
Cmetu04g2908 396 ProSiteProfiles Zinc finger RanBP2 type profile. 219 248 IPR001876 -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 320 396 - -
Cmetu04g2908 396 CDD RRM_SARFH 15 97 - -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 246 287 - -
Cmetu04g2908 396 PANTHER ZINC FINGER RAN-BINDING DOMAIN-CONTAINING PROTEIN 2 ZRANB2-RELATED 125 395 - -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 178 217 - -
Cmetu04g2908 396 SMART rrm1_1 14 95 IPR000504 GO:0003723
Cmetu04g2908 396 Gene3D - 12 95 IPR012677 -
Cmetu04g2908 396 ProSitePatterns Zinc finger RanBP2-type signature. 223 242 IPR001876 -
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 322 390 - -
Cmetu04g2908 396 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 13 99 IPR000504 GO:0003723
Cmetu04g2908 396 MobiDBLite consensus disorder prediction 195 211 - -
Cmetu04g2908 396 Gene3D - 218 249 - -
Cmetu04g2908 396 Gene3D - 148 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g2908 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g2908 Cmetu-Chr4:8370744 Cmetu12g0224 Cmetu-Chr12:24562833 1.20E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1257 . . . . . Bpe10g00764 . Bma15g00258 Cmo04g01938 . . Cma18g00689 . Car18g00639 Sed01g1192 Cpe09g00596 Cpe01g01622 Bhi07g01933 Tan04g0039 Cmetu04g2908 Lac13g0044 Hepe10g1508 . . . . . . . . . . . . . Lsi04g00689 . . Cme10g00672 . . . . . . . . . . . Cma04g01842 . Car04g01847 . . . . . . . . . . Cla11g01331 Cam11g1390 Cec11g1412 Cco11g1408 Clacu11g1548 Cmu11g1369 Cre11g1787 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007014 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 0 1 1 1 2 1 1 36