Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3004 ATGGCAGATTCCGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACAGGAATGGTCAAGGCTGGATTTGCTGGTGACGATGCTCCAAGGGCTGTATTCCCTAGCATTGTTGGTCGTCCCAGACACACCGGTGTTATGGTTGGTATGGGCCAAAAGGATGCCTATGTTGGTGATGAAGCTCAATCGAAGAGAGGTATTTTGACTTTAAAATATCCCATCGAGCATGGTATCGTAAGCAATTGGGATGATATGGAGAAAATTTGGCATCACACTTTCTACAACGAGCTTCGAGTTGCTCCAGAAGAGCATCCAGTTCTGCTCACCGAAGCACCATTGAATCCCAAGGCGAATAGAGAGAAAATGACCCAAATAATGTTTGAGACTTTCAACACGCCCGCTATGTATGTTGCTATCCAGGCCGTCCTTTCCCTTTATGCCAGTGGTCGCACAACCGGGATCGTTTTGGATTCTGGTGATGGTGTCAGCCACACAGTTCCAATCTACGAAGGGTATGCTCTCCCACATGCCATCCTCCGTCTAGATTTGGCTGGCCGTGATCTCACAGATGCTTTAATGAAAATCTTGACTGAACGTGGTTACTCTTTCACCACAACCGCCGAGCGTGAAATTGTGAGAGACATGAAGGAGAAACTAGCTTACATAGCCCTGGATTACGAGCAAGAGCTAGAGACATCAAAAACCAGCTCTTCAGTGGAGAAGAGCTATGAACTACCAGATGGACAGGTGATCACCATTGGTGCTGAAAGATTCCGATGCCCTGAAGTTCTCTTCCAGCCATCCATGATAGGAATGGAAGCAGCTGGTATTCATGAAACCACATACAATTCTATCATGAAGTGTGATGTCGATATTAGAAAGGATCTCTACGGCAACATTGTCCTCAGTGGTGGTTCCACCATGTTCCCTGGCATTGCTGACAGGATGAGCAAGGAGATCACTGCATTAGCTCCAAGTAGCATGAAGATCAAAGTGGTAGCACCACCTGAAAGAAAGTACAGTGTCTGGATTGGAGGCTCCATTTTAGCTTCCCTCAGCACTTTCCAACAGATGTGGATTGCTAAGGCAGAATATGATGAATCTGGGCCATCAATTGTCCACAGGAAATGCTTCTGA 1134 46.38 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSSVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 6348349 6352239 + PI0014208.1 Cmetu04g3004 355448

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3004 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cmetu04g3004 377 PANTHER ACTIN 9 370 IPR004000 -
Cmetu04g3004 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cmetu04g3004 377 PRINTS Actin signature 51 62 IPR004000 -
Cmetu04g3004 377 PRINTS Actin signature 238 254 IPR004000 -
Cmetu04g3004 377 PRINTS Actin signature 63 85 IPR004000 -
Cmetu04g3004 377 PRINTS Actin signature 142 161 IPR004000 -
Cmetu04g3004 377 PRINTS Actin signature 28 37 IPR004000 -
Cmetu04g3004 377 PRINTS Actin signature 117 130 IPR004000 -
Cmetu04g3004 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cmetu04g3004 377 Pfam Actin 5 377 IPR004000 -
Cmetu04g3004 377 SMART actin_3 7 377 IPR004000 -
Cmetu04g3004 377 FunFam Putative actin-related protein 5 341 369 - -
Cmetu04g3004 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
Cmetu04g3004 377 Gene3D - 140 340 - -
Cmetu04g3004 377 FunFam Actin, muscle 182 273 - -
Cmetu04g3004 377 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Cmetu04g3004 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cmetu04g3004 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cmetu04g3004 377 FunFam Actin, alpha skeletal muscle 3 178 - -
Cmetu04g3004 377 Gene3D - 10 371 - -
Cmetu04g3004 377 FunFam Major actin 260 340 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3004 K10355 - - csv:101221679 750.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1250 Cmetu-Chr1:2241759 Cmetu04g3004 Cmetu-Chr4:6348349 8.40E-212 dispersed
Cmetu02g1792 Cmetu-Chr2:22840093 Cmetu04g3004 Cmetu-Chr4:6348349 1.90E-74 dispersed
Cmetu03g1674 Cmetu-Chr3:25594557 Cmetu04g3004 Cmetu-Chr4:6348349 2.70E-96 dispersed
Cmetu04g3004 Cmetu-Chr4:6348349 Cmetu09g0809 Cmetu-Chr9:18358242 4.30E-216 dispersed
Cmetu04g3004 Cmetu-Chr4:6348349 Cmetu08g1718 Cmetu-Chr8:16104350 1.00E-217 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT2G37620 96.8 8.1e-215 743.0
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT2G37620 95.5 2.6e-213 738.0
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT2G37620 95.8 2.2e-212 734.9
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT2G37620 94.4 2.9e-212 734.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT2G37620 95.8 3.5e-186 647.9
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G59370 96.8 4.0e-214 740.7
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G59370 97.1 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G59370 96.6 7.6e-213 736.5
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G59370 94.2 7.1e-211 729.9
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G59370 94.4 3.5e-210 727.6
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G59370 96.4 2.7e-186 648.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G46520 97.1 1.8e-214 741.9
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G46520 97.3 3.1e-214 741.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G46520 96.8 3.4e-213 737.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G46520 94.4 3.2e-211 731.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G46520 94.7 1.6e-210 728.8
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G46520 96.7 1.2e-186 649.4
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G12110 97.1 3.6e-215 744.2
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G12110 96.6 4.0e-214 740.7
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G12110 96.0 3.4e-213 737.6
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G12110 95.5 9.9e-213 736.1
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G12110 95.2 2.2e-212 734.9
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G12110 97.0 8.4e-188 653.3
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT3G18780 93.1 5.1e-209 723.8
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 5.1e-209 723.8
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT3G18780 92.6 1.9e-208 721.8
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 1.9e-208 721.8
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT3G18780 92.3 9.6e-208 719.5
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT3G18780 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT1G49240 93.4 1.7e-209 725.3
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT1G49240 92.8 1.7e-209 725.3
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 6.6e-209 723.4
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT1G49240 92.6 3.3e-208 721.1
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT1G49240 92.3 4.3e-208 720.7
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT1G49240 93.1 6.3e-183 637.1
Cmetu08g0868 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu11g0408 . 1 377 Cytoskeleton Gene Families AT5G09810 98.4 8.7e-217 749.6
Cmetu01g1250 . 1 377 Cytoskeleton Gene Families AT5G09810 96.0 2.4e-214 741.5
Cmetu04g3004 . 1 377 Cytoskeleton Gene Families AT5G09810 96.6 6.9e-214 740.0
Cmetu08g1718 . 1 377 Cytoskeleton Gene Families AT5G09810 96.3 2.0e-213 738.4
Cmetu09g0809 . 1 377 Cytoskeleton Gene Families AT5G09810 95.5 6.4e-212 733.4
Cmetu10g0742 . 1 332 Cytoskeleton Gene Families AT5G09810 95.8 6.0e-186 647.1
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT2G19760 77.9 8.3e-58 219.9
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT2G19760 76.7 2.7e-56 214.9
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT2G19760 73.3 9.5e-54 206.5
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29350 78.6 1.1e-57 219.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29350 75.2 6.6e-55 210.3
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29350 74.0 3.3e-54 208.0
Cmetu05g1709 . 1 87 Cytoskeleton Gene Families AT5G56600 78.2 1.3e-37 152.5
Cmetu05g1788 . 1 133 Cytoskeleton Gene Families AT4G29340 85.8 3.2e-65 244.6
Cmetu05g1709 . 1 131 Cytoskeleton Gene Families AT4G29340 70.9 4.4e-54 207.6
Cmetu04g1863 . 1 131 Cytoskeleton Gene Families AT4G29340 67.9 1.6e-51 199.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000079 8 8 7 8 6 8 16 8 8 7 8 8 15 7 7 14 8 15 16 8 7 7 6 8 8 8 7 14 15 6 276