Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3017 ATGGTGAAGAAGTGGAGTTGGGGAGAGCCGTTGCTGCTAGTCAGTATCTGCATTTTGGGATGGAGGATTAGTTTTATCAATGGAGCTACGGATCCAGGAGATGTATCGGCTCTAAATGCCATGTATAGTAGTTTAAACTCTCCTCCAATTCTAACACAATGGAGTTCGAGTGGTGGAGATCCATGTGGACAAATTTGGAAAGGCATTACTTGCTTGGGCTTAAGGGTCACAGAAATTTCATTGTCTGGTTTAGGACTTTCTGGAACACTGGGGTACCAGCTCTCAAGTTTGACATCCCTAAATAATCTAGATGTGAGTAACAACAATCTTGGACCTGACATACCTTATCAGCTCCCTCAAAACTTGCAAAAACTAAACCTTGGATGGAATAACTTCAGTGGAAGCATCCCCTACTCTATTTCTCAAATGAGTTTGCTTATTTCCTTGAACATGAGCCACAATCAGCTTCAAAATCAAGTGAATGATATGTTCTGGAAGCTTTCTTCCCTGGCCATGTTGGACGTCTCTTTCAATTCTCTGTCAGGTGCCCTCCCCCAGAGTTTTAGCAACCTTACTAGTCTGAACGCTATGTTTCTGCAAAACAACCAATTCAGTGGCACTATTGATGTTCTTGCAAATCTTCCGCTACAAAATTTGAATGTCGAGAACAACCATTTTACTGGTTGGGTTCCTGAACGATTGAAGAATATAAATATTCAGGAGGGTGGCAATTCTTGGAGCTTTGGGCTTGCGCCGCCACCTCCACCTGGGACTCCTCCAGCCAACCAAAATTACAGATATCACAAGGCTGGGAACAGTTACAGCCCACTGAGTAGTGATGCTGCTGGTGGAGGTAGCAATAGATCAGGAATCAGTGGTGGTGCCATTGCTGGAATTCTTATATCTGTGCTAGTGGTAGGAGCAATGCTAGCATATCTTCTTGTAAAGAGAAAATCCAAGAGGCCATCCACAGACATAGAAAAGCAAAAGCATGGGAACTTGCCTATTGTATCTCCTGCTTCAAATGAAGTGCAAGATGCATTGGCAGAGATGAAGCTTGTTCATACTTCATCCTCATTTGATGCGAAAGAATTGGATTCTCCTGCTTCAATCAATCTTAAACCCCCACCTATTGATCGTCATAAATCATTTGATGACAATGATACATCAAAGGTACCTGTGGTGAAGAAGACCAATGTCACTGCCCTGATAAGTGTGAAATCATATTCAATAGCAGATCTGCAAATGGCTACGGGTAGTTTCAATGTAGAAAACCTTCTTGGTGAGGGATCACTTGGACGTGTTTATCGGGCTCAGTTCAATGATGGGAAGGTTCTTGCAGTGAAGAAAATAGATTCAGCTGCCTTCCCTAGAGAATTGTTGGAAGATTTCATGGAGATCGTTGCTAATATATCTCAGCTGCATCATCCTAATGTAACCGAGCTAACGGGCTATTGCTCAGAGCATGGCCTGCATTTGCTAATATATAAGTTCCATAAGAATGGCTCCCTACATGACTTCTTGCACATATCAGATGAATATAGCAAGCCATTGACTTGGAACTCACGTGTCAAGATTGCTTTAGGGACGGCCCGTGCTTTAGAGTACCTACATGAAGTTTGTGCACCGTCAGTTGTTCACAGAAATATCAAGTCAGCCAATATCTTACTAGATGCTGAAATGAATCCTCATCTCTCCGATTGTGGTCTGGCTAGCTTTATAACCAATCTAGATCAGGCATTGGATCAGCAGGCAGGATCTGGGTACAGTGCTCCGGAGGTTACCATGTCTGGTCAATATACATTAAAAAGTGACGTATATAGCTTTGGAGTGGTGATGTTAGAACTTCTAAGCGGACGCAAGCCATTTGATAGTTCAAGGCCAAGAGCTGAGCAATCCTTGGTTCGATGGGCTACGCCTCAGCTTCATGATATTGATGCCTTGACGAAAATGGTTGATCCTGCACTTAAAGGGCTCTACCCAGTTAAGTCTCTCTCGAGATTTGCAGACGTTGTAGCTCTTTGCGTCCAGCCTGAGCCTGAATTCAGACCACCCATGTCGGAGGTGGTGGAAGCGTTGGTTCGGCTTGTGCAGAGATCCAACATGAGCAGAAGAACATTTGGAAGTGATCATGGATCATCCTTTAGAACTGATGATCTTGATGCACGTGAGACATCTTAA 2181 43.56 MVKKWSWGEPLLLVSICILGWRISFINGATDPGDVSALNAMYSSLNSPPILTQWSSSGGDPCGQIWKGITCLGLRVTEISLSGLGLSGTLGYQLSSLTSLNNLDVSNNNLGPDIPYQLPQNLQKLNLGWNNFSGSIPYSISQMSLLISLNMSHNQLQNQVNDMFWKLSSLAMLDVSFNSLSGALPQSFSNLTSLNAMFLQNNQFSGTIDVLANLPLQNLNVENNHFTGWVPERLKNINIQEGGNSWSFGLAPPPPPGTPPANQNYRYHKAGNSYSPLSSDAAGGGSNRSGISGGAIAGILISVLVVGAMLAYLLVKRKSKRPSTDIEKQKHGNLPIVSPASNEVQDALAEMKLVHTSSSFDAKELDSPASINLKPPPIDRHKSFDDNDTSKVPVVKKTNVTALISVKSYSIADLQMATGSFNVENLLGEGSLGRVYRAQFNDGKVLAVKKIDSAAFPRELLEDFMEIVANISQLHHPNVTELTGYCSEHGLHLLIYKFHKNGSLHDFLHISDEYSKPLTWNSRVKIALGTARALEYLHEVCAPSVVHRNIKSANILLDAEMNPHLSDCGLASFITNLDQALDQQAGSGYSAPEVTMSGQYTLKSDVYSFGVVMLELLSGRKPFDSSRPRAEQSLVRWATPQLHDIDALTKMVDPALKGLYPVKSLSRFADVVALCVQPEPEFRPPMSEVVEALVRLVQRSNMSRRTFGSDHGSSFRTDDLDARETS 726
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 14760582 14767696 + PI0017813.3 Cmetu04g3017 355461

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3017 726 MobiDBLite consensus disorder prediction 711 726 - -
Cmetu04g3017 726 Gene3D Transferase(Phosphotransferase) domain 1 500 717 - -
Cmetu04g3017 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 8 499 707 - -
Cmetu04g3017 726 FunFam Protein STRUBBELIG-RECEPTOR FAMILY 8 385 498 - -
Cmetu04g3017 726 CDD STKc_IRAK 427 696 - -
Cmetu04g3017 726 Gene3D Ribonuclease Inhibitor 31 250 IPR032675 -
Cmetu04g3017 726 SUPERFAMILY L domain-like 30 236 - -
Cmetu04g3017 726 Pfam Protein tyrosine and serine/threonine kinase 423 693 IPR001245 GO:0004672|GO:0006468
Cmetu04g3017 726 SUPERFAMILY Protein kinase-like (PK-like) 402 693 IPR011009 -
Cmetu04g3017 726 ProSiteProfiles Protein kinase domain profile. 421 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3017 726 MobiDBLite consensus disorder prediction 705 726 - -
Cmetu04g3017 726 Gene3D Phosphorylase Kinase; domain 1 383 498 - -
Cmetu04g3017 726 Pfam Leucine rich repeat 121 180 IPR001611 GO:0005515
Cmetu04g3017 726 MobiDBLite consensus disorder prediction 245 270 - -
Cmetu04g3017 726 FunFam protein STRUBBELIG-RECEPTOR FAMILY 3 31 257 - -
Cmetu04g3017 726 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Cmetu04g3017 726 PANTHER LEUCINE RICH REPEAT KINASE 2 76 699 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3017 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g1756 Cmetu-Chr3:15376609 Cmetu04g3017 Cmetu-Chr4:14760582 3.50E-171 dispersed
Cmetu04g3017 Cmetu-Chr4:14760582 Cmetu12g0052 Cmetu-Chr12:11171770 5.40E-167 dispersed
Cmetu01g1056 Cmetu-Chr1:28077696 Cmetu04g3017 Cmetu-Chr4:14760582 5.30E-215 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu12g0052 . 388 681 Strubbelig Receptor Gene Family AT1G11130 53.4 1.4e-84 311.2
Cmetu04g0236 . 3 715 Strubbelig Receptor Gene Family AT5G06820 50.1 3.3e-188 655.6
Cmetu01g1679 . 53 772 Strubbelig Receptor Gene Family AT4G03390 60.4 8.3e-190 661.0
Cmetu04g2436 . 17 731 Strubbelig Receptor Gene Family AT4G03390 53.4 7.4e-154 541.6
Cmetu01g1056 . 378 689 Strubbelig Receptor Gene Family AT4G03390 56.8 2.0e-90 330.9
Cmetu03g1756 . 20 675 Strubbelig Receptor Gene Family AT3G13065 51.9 3.7e-141 499.2
Cmetu01g1056 . 28 687 Strubbelig Receptor Gene Family AT3G13065 50.4 4.0e-103 372.9
Cmetu03g1756 . 22 697 Strubbelig Receptor Gene Family AT1G78980 59.3 1.7e-189 659.8
Cmetu04g3017 . 23 719 Strubbelig Receptor Gene Family AT1G78980 50.8 1.3e-154 543.9
Cmetu01g1056 . 24 692 Strubbelig Receptor Gene Family AT1G78980 51.3 2.6e-126 449.9
Cmetu04g3017 . 1 719 Strubbelig Receptor Gene Family AT1G53730 59.8 6.3e-216 747.7
Cmetu01g1056 . 1 714 Strubbelig Receptor Gene Family AT1G53730 61.2 9.4e-188 654.1
Cmetu03g1756 . 15 683 Strubbelig Receptor Gene Family AT1G53730 50.6 4.4e-153 538.9
Cmetu04g3017 . 11 714 Strubbelig Receptor Gene Family AT3G14350 53.4 2.5e-190 662.5
Cmetu01g1056 . 6 704 Strubbelig Receptor Gene Family AT3G14350 56.4 4.5e-171 598.6
Cmetu12g0052 . 138 711 Strubbelig Receptor Gene Family AT4G22130 61.9 1.0e-181 633.6
Cmetu04g3017 . 404 726 Strubbelig Receptor Gene Family AT4G22130 64.0 1.1e-119 427.6
Cmetu01g1056 . 391 706 Strubbelig Receptor Gene Family AT4G22130 64.8 3.4e-116 416.0
Cmetu01g1679 . 486 764 Strubbelig Receptor Gene Family AT4G22130 59.8 1.6e-102 370.5
Cmetu03g1756 . 351 697 Strubbelig Receptor Gene Family AT4G22130 53.4 2.4e-98 356.7
Cmetu04g2436 . 464 731 Strubbelig Receptor Gene Family AT4G22130 60.4 6.4e-91 332.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001486 0 7 2 3 1 2 4 1 2 2 2 2 4 2 2 4 2 3 4 2 2 2 2 1 1 2 2 1 1 1 66
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70420 PF07714 PK_Tyr_Ser-Thr 4.10E-42 CL0016 Cmetu PK