Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3041 ATGGACTGCTTGACCTCCTACTCTTTACCAGCCGCATTTGCCTTCTCTAAGCCTTCCGTTTCACTCTCTAAGCCGCCATTTCTCGCCGTCGCTCGTGGAGCCGTGTCGATGTTTGGAGTTCTCAGAGCATCTCACACCGCGAACGCGCCCCCGTCCGTCGACGACTCGCCGGAAAACCGCACTGATAAAGAGGTTAAGCTTTGGGGCGGTCGTTTCGAGGAGAGCGTCACTGATGCAGTTGAGCGATTTACCGAATCGATCTCCTACGATAAGCAGCTTTACAAGCACGATATCAGAGGGAGCCGAGCTCATGCTACTATGCTAGCTAAGCAGGGACTGATGAGTGTTGATGAAAGGGATAGTATTCTTGAAGGTTTGGATCAAATTGAGAGGCAAATTGAAAGTGGTGATTTTGTTTGGAGAACAGATAGGGAGGATGTTCATATGAACATTGAGGCTGCCTTGATTGATATGATTGGTGAACCTGCAAAGAAGCTACATACTGCTCGAAGCCGCAACGATCAAGTTCTGACTGATTTCCGATTGTGGTGCCGGGATGCAATTGATCATATATTAGATGCTATTAAGTACCTGCAAGTTTCCATGGTAACTCTGGCATTGAAGAATGAGGGATTAATCGTTCCGGGTTATACACATTTACAAAGAGCACAACCGGTTCTTCTCCAGCATCTGCTCTTAGCATTTGTAGAGCAGCTTGAAAGAGATGCTGGTCGTTTGTCGGATTGCAGAGTTAGGCTAAATCTCTCCCCGCTAGGTGCATGTGCGCTGGCTGGCACAGGCCTTCCCATTGATCGCATCGACGCAGTTTCGGATCGAGATTTTGCCTTGGAATTTCTGTCTGCCAATGCGATTACCGCTATCCATCTTTCAAGGCTAGGAGAAGAATGGGTGTTGTGGGCTTCTGAAGAGTTCGGATTCATAACACCCAATGATTCTGTTTCAACTGGAAGTAGCATAATGCCTCAGAAGAAAAATCCAGATCCAATGGAACTTGTTCGTGGGAAGTCCGCAAGAGTTATAGGAGACTTGGTAACCACTCTCACGTTATGCAAAGGTCTGCCTCTTGCCTACAATCGTGATTTGCAGGAAGACAAGGAACCTGTGTTTGACAGCGTAAAGACAATACTGGGAATGCTTGAAGTGTCAGCTGAATTTGCTCAGAATATTTCTTTCAATAGGGAGAGAATAGAAAAGGCTTTACCTGCTGGGTATCTTGATGCCACAACACTTGCTGATTACCTTGTGAAGAAGGGAATACCTTTCAGAACAGGTCATGACATAGTCGGAAAGTCTGTTGCCTTATGTGTCACAAAAAAGTGTTGCCTCCAGGACTTGAGTCTGGATGAGCTAAGAAGCATAAGTCCAGTATTTGAAGAGGATGTTTACGAGTTTCTCGGGGCTGAGAATGCAATTAATAAATTTTGTTCGTATGGTTCGACAGGAGCAGCATGTGTCGCTACTCAAATCGAGTATTGGGTTAATAAACTCCAAATCAATGCGTAG 1524 45.87 MDCLTSYSLPAAFAFSKPSVSLSKPPFLAVARGAVSMFGVLRASHTANAPPSVDDSPENRTDKEVKLWGGRFEESVTDAVERFTESISYDKQLYKHDIRGSRAHATMLAKQGLMSVDERDSILEGLDQIERQIESGDFVWRTDREDVHMNIEAALIDMIGEPAKKLHTARSRNDQVLTDFRLWCRDAIDHILDAIKYLQVSMVTLALKNEGLIVPGYTHLQRAQPVLLQHLLLAFVEQLERDAGRLSDCRVRLNLSPLGACALAGTGLPIDRIDAVSDRDFALEFLSANAITAIHLSRLGEEWVLWASEEFGFITPNDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTTLTLCKGLPLAYNRDLQEDKEPVFDSVKTILGMLEVSAEFAQNISFNRERIEKALPAGYLDATTLADYLVKKGIPFRTGHDIVGKSVALCVTKKCCLQDLSLDELRSISPVFEEDVYEFLGAENAINKFCSYGSTGAACVATQIEYWVNKLQINA 507
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 31492876 31497135 - PI0003452.1 Cmetu04g3041 355485

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3041 507 Hamap Argininosuccinate lyase [argH]. 66 501 IPR009049 GO:0004056|GO:0042450
Cmetu04g3041 507 Gene3D - 408 480 - -
Cmetu04g3041 507 Pfam Argininosuccinate lyase C-terminal 411 478 IPR029419 -
Cmetu04g3041 507 FunFam Argininosuccinate lyase 409 480 - -
Cmetu04g3041 507 NCBIfam argininosuccinate lyase 67 499 IPR009049 GO:0004056|GO:0042450
Cmetu04g3041 507 Gene3D Fumarase/aspartase (Central domain) 183 496 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 257 273 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 206 226 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 279 303 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 323 339 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 165 187 - -
Cmetu04g3041 507 PRINTS Argininosuccinate lyase family signature 358 377 - -
Cmetu04g3041 507 PANTHER ARGININOSUCCINATE LYASE 51 506 IPR009049 GO:0004056|GO:0042450
Cmetu04g3041 507 FunFam Argininosuccinate lyase 66 170 - -
Cmetu04g3041 507 ProSitePatterns Fumarate lyases signature. 323 332 IPR020557 GO:0003824
Cmetu04g3041 507 FunFam Argininosuccinate lyase chloroplastic 277 435 - -
Cmetu04g3041 507 PRINTS Fumarate lyase superfamily signature 166 184 IPR000362 -
Cmetu04g3041 507 PRINTS Fumarate lyase superfamily signature 279 306 IPR000362 -
Cmetu04g3041 507 PRINTS Fumarate lyase superfamily signature 323 339 IPR000362 -
Cmetu04g3041 507 PRINTS Fumarate lyase superfamily signature 211 229 IPR000362 -
Cmetu04g3041 507 CDD Argininosuccinate_lyase 86 503 IPR009049 GO:0004056|GO:0042450
Cmetu04g3041 507 Pfam Lyase 272 348 IPR022761 -
Cmetu04g3041 507 Pfam Lyase 70 272 IPR022761 -
Cmetu04g3041 507 SUPERFAMILY L-aspartase-like 67 503 IPR008948 GO:0003824
Cmetu04g3041 507 Gene3D - 86 277 IPR024083 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3041 K01755 - - csv:101205167 974.926
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0752 Cmetu-Chr3:2948708 Cmetu04g3041 Cmetu-Chr4:31492876 2.40E-219 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g518 . Blo12g00732 . Bda03g00456 . . Bma04g00431 Bma01g02585 . Cmo12g00155 . . . Car12g00183 Sed01g4279 . Cpe07g00171 Bhi04g01383 Tan02g2479 Cmetu03g0752 . Hepe10g0432 . Lcy13g1481 . . . . . . . . . . . Lsi04g02280 Csa03g04493 Chy04g00207 . . . Bda11g00800 . . . . . Sed05g1560 . . Cma12g00201 . . . . . Bhi09g02498 Tan01g3852 Cmetu04g3041 . Hepe01g2170 Mch11g0709 . Cla11g01425 Cam11g1480 Cec11g1510 Cco11g1506 Clacu11g1641 Cmu11g1459 Cre11g1877 . . . Cme04g00237
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002720 2 2 1 3 1 1 2 2 2 2 2 2 1 2 2 2 2 1 2 2 2 2 2 2 1 2 2 2 2 1 54