Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3167 ATGGACGACCATATTTCTCAACGATTCAGCAGTGGATTGGAATTAGGGAATTTCATTGCGACTTCAGATTTGTTGGAACATTCATGGAACGCGATTACGAAACGTCGTAGTGAAATTCAATTTACTTTACCGATTTATTCCGTGTTTCATGGATATTACAATGAGCGATTGAATTGTAAGATTGTTGCGTTTGTTACTGCTCCGAACTTTACGGAAAATCCTATTGAAGGAGATGGAGGAGAAGATCTGGTTTTGGTTTCGGATATGGTGAAGGATGAGTTCACTGCCTTTGAGTTTCTTCAATCTAAAGCTTGCCCGAATTCCGCCATTAATGGAGTCGCTCTTGAGCTCTTTCGCCGCTTCTATCCTGTTTACGAACAAGAGATTTCAAGGCTGAAATCCAATTCCAACACTCAATTAATAATCACAGGACATGGTTTAGGAGGATCAGTTGCTTCTCTCTTCACTTTATTACTTCTTGACTCCCTAGATCTCACCAAAACCAAACGCCCTCTCTGTATAACTTTTGGTTCTCCTCTATTAGGCGATGAAGCCTTTCAAACCGCCATTTCATACTTCTCAACTTGGTCTTCTTGCTTCCTTCATCTTGTCTCCAACCAAGACCCTCTTCCTAGAAAGTTATTGAACAACAAAGCTTACTATCCCTTTGGCACTTTCTTGTTCTGCTCCCAATCTGGTGGTTGTTCTTGTTTCGAAGACCCGAATTCGATCTTGAAAGTGTTGGAGACAACTAAAGCTAATAATGATGTTCTTAATGCTTCTGCGTTCTTTGATTATAAGAAAACAATTGATCGTTTAATAAAGGAGGCCAATTTTAAGGCTAACACGAATATGATAATGGAAAATGCAGAGTCGTGGACAGGGAGCTTTGTAGCACAACTTGAAGCTATTGGAGTTGCTCAAAATCACGCACAGCAGCAGCAGAGATTAGTAGATATTAACAGACTCGCAAGAACATTAAAAGACAACGAGATGAACATGATACTTGAGAACACAAAACCATTTGCCAAAACATTGAATGACGTGAAAATAAACATGGCAAAACTTGAATGGTACAAGAAAAGGTGTAAGCGTGATAAGATTGGTTACTATGACAGCTACAAAACCCAAAAGGAGAAACGTGACATTACAGTTGCTGAGTTCAAAAAGATCCTACAAGTTTACTGGGAAAACAAGGTAGAGGAAGCAGAAAGAAAGCCACTAAGAGATGGAGCTCCATTCGATGTAAAATTATTATTCGGTGGGACAAACTACCGACGAATGGTCGAACCACTCGACATCGCGGAACACTACGGAAAGGGGTTGAACGACTACAAATCTCACAGACCAAAGCACTATACTAAGCTAGAACAATGGTTCGAAGATTCAAAGACTCCTGATTCGAGTTCGATGCAAGGAGAAGCGGTTTCTTCTATACTTACAGTGGATTCTCTGTTTTGGGTACATGTGGAAGAGGCTATTCTGGCATGTAATGCGGTGAAAAAGGGGGATTGTAGTGAAGAAGAAAGGGAAGCAGAATTAGCAAAGCTTACAGAATTTGAAGATTATGTTGTGGAATTGATGAGGAATTATGCTGTATCTTCTGAGATTTTCTTACAAGATAGCACATTCATGAAATGGTGGAAAGAATATGATGAGATTGTGGGAGATGATCATGATTCAGTGCTCTCAAGGTTAATGAGGAATCAAGAATATGAAGAATATGATAATGGGAGGTTAGAGATTCCTTTTTAA 1755 39.54 MDDHISQRFSSGLELGNFIATSDLLEHSWNAITKRRSEIQFTLPIYSVFHGYYNERLNCKIVAFVTAPNFTENPIEGDGGEDLVLVSDMVKDEFTAFEFLQSKACPNSAINGVALELFRRFYPVYEQEISRLKSNSNTQLIITGHGLGGSVASLFTLLLLDSLDLTKTKRPLCITFGSPLLGDEAFQTAISYFSTWSSCFLHLVSNQDPLPRKLLNNKAYYPFGTFLFCSQSGGCSCFEDPNSILKVLETTKANNDVLNASAFFDYKKTIDRLIKEANFKANTNMIMENAESWTGSFVAQLEAIGVAQNHAQQQQRLVDINRLARTLKDNEMNMILENTKPFAKTLNDVKINMAKLEWYKKRCKRDKIGYYDSYKTQKEKRDITVAEFKKILQVYWENKVEEAERKPLRDGAPFDVKLLFGGTNYRRMVEPLDIAEHYGKGLNDYKSHRPKHYTKLEQWFEDSKTPDSSSMQGEAVSSILTVDSLFWVHVEEAILACNAVKKGDCSEEEREAELAKLTEFEDYVVELMRNYAVSSEIFLQDSTFMKWWKEYDEIVGDDHDSVLSRLMRNQEYEEYDNGRLEIPF 584
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9123737 9127710 - PI0017325.1 Cmetu04g3167 355611

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3167 584 Gene3D alpha/beta hydrolase 85 268 IPR029058 -
Cmetu04g3167 584 PANTHER SENESCENCE-ASSOCIATED CARBOXYLESTERASE 101 6 579 IPR044603 GO:0006952|GO:0052689
Cmetu04g3167 584 Pfam Enhanced disease susceptibility 1 protein EP domain 354 565 IPR041266 -
Cmetu04g3167 584 Pfam Lipase (class 3) 106 212 IPR002921 GO:0006629
Cmetu04g3167 584 SUPERFAMILY alpha/beta-Hydrolases 118 261 IPR029058 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3167 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3167 Cmetu-Chr4:9123737 Cmetu08g0473 Cmetu-Chr8:12554263 7.20E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g677 Blo04g00750 . Bda06g00573 . . . . . . . Cma10g00155 . Car10g00146 Car11g00117 Sed08g1374 . . Bhi02g00383 Tan09g2193 Cmetu04g3167 . Hepe09g0163 . . . . . . . . . . . . . . . . . . Blo15g00283 . Bda14g00829 Bpe07g00815 Bpe15g00622 Bma03g00803 . . Cmo10g00166 Cmo11g00124 . . . . . Cpe18g00822 . . . . . . . . . . . . . . . Csa01g00187 Chy02g02546 Cme02g01930
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010846 0 1 0 0 0 1 1 2 1 1 2 2 1 1 1 1 2 1 1 1 1 1 1 2 2 1 1 2 1 0 32