Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3175 ATGTCCGCTTCATCCCAAACACCGATCGATGAGCCGCCTTCCGCCGGCGATGAATCTTCCAAAGCCGTCAGCAAGAAAGCCGCCAAGAAGGAGGCTGCCAAGCAAGAAAAGCTCCGCCGTCGCCAAGAAGCAGCTGCAGAATCTGCTATTTCGTCTCTCAACGTCGAGGACGATCCGCTTTCTGCTAACTATGGCGATGTACCGTTATCTGATCTCCAATCAAAGGAGGTTAAGAGTATTGAAAACTGGACTCAGGTTGGCTCTTTGACGCCGGAGCTTAAAGACAAGTATGTGGTTCTACGGGGTCGTGTTCAGACGATTCGTGCTGTTGGGAAGAAGATGGCGTTTTTGGTGGTGAGAGAAAAGGGATTCACCGTGCAATGCGTTTTGTCGGAGCAGCCGGAGTTTGTTAGTCGCCAGATGGTGAAGTATGTTGATGGATTGAGCCGTGAGTCCATCGTTGACGTTGAAGGAGTTGTGTCTGTGCCCAATGTTGCCATTAAAGGTGCTTCGCAACAGGTGGAAATTCAAGTGAGGAAAGTATATTGCATCAGTAAGGCAATGCCGACTTTGCCTATAAATATTGAAGATGCTTCCCGTAGTGAAGCTGAAATTGAAAAGGCCTTGCAGGCTGGTGAGCAACTGGTACGTGTTAATCAGGATACGCGTTTGAACTACAGAGTCCTTGATATGCGAACTCCAGCTAATCAAGGAATTTTTCGCATTCAATGTCAAGTTTCAACGATGTTTAGACAATTTCTGTTGGATGAAGACTTTGTTGAAATCCACACTCCAAAATTGATCGGAGGTTCTAGTGAAGGCGGTGCTTCTGTTTTTAGGTTGGATTACAAAGGCCAACCTGCTTGCCTGGCTCAGTCACCTCAGTTACATAAGCAAATGGCAATCTGTGGTGACTTTGGGCGTGTATTTGAGATTGGTCCTGTTTTTAGAGCAGAAGACTCGTACACACACAGACATTTATGTGAATTTACAGGACTTGATGTTGAAATGGAGATCAAGACTCACTATTCTGAGGTCATGGACATTGTGGACCGTTTATTTGTTGCAATGTTTGATAGTTTGAATAAAAAATGTAAGAAAGCGCTTGAAGCAGTTGATAAACAGTATCCCTTTGAACCTTTGAAGTACTTACGAAAAACTCTACGACTTACATTTGAGGAAGGAATTCAGATGTTGAAGGATGCTGGCGTTGAAATTGATCCTCTTGGGGATCTTAATACAGAGGCTGAGAGGAAATTGGGACAACTCGTCTTAGAGAAATATGGCACGGAGTTCTACATTCTTCACCGCTATCCTTTGGCTGTTAGGCCATTCTACACTATGCCTTGCTATGATAACCCAACTTACAGTAACTCATTTGACGTCTTTATTCGAGGGGAAGAAATCATTTCTGGAGCTCAGCGTGTCCACGTGCCAGAATTTCTAGCTGAACGCGCTCAAGCATGTGGCATTGATGTAAAAACCATAGAAACATATATTGATTCATTCAGATATGGTGCCCCTCCGCACGGTGGATTTGGAGTAGGTTTGGAGCGCGTGGTGATGCTGTTTTGTGGTTTGAATAACATTCGCAAAACATCATTGTTCCCTCGTGATCCACAGAGGATTGCTCCTTAG 1638 44.75 MSASSQTPIDEPPSAGDESSKAVSKKAAKKEAAKQEKLRRRQEAAAESAISSLNVEDDPLSANYGDVPLSDLQSKEVKSIENWTQVGSLTPELKDKYVVLRGRVQTIRAVGKKMAFLVVREKGFTVQCVLSEQPEFVSRQMVKYVDGLSRESIVDVEGVVSVPNVAIKGASQQVEIQVRKVYCISKAMPTLPINIEDASRSEAEIEKALQAGEQLVRVNQDTRLNYRVLDMRTPANQGIFRIQCQVSTMFRQFLLDEDFVEIHTPKLIGGSSEGGASVFRLDYKGQPACLAQSPQLHKQMAICGDFGRVFEIGPVFRAEDSYTHRHLCEFTGLDVEMEIKTHYSEVMDIVDRLFVAMFDSLNKKCKKALEAVDKQYPFEPLKYLRKTLRLTFEEGIQMLKDAGVEIDPLGDLNTEAERKLGQLVLEKYGTEFYILHRYPLAVRPFYTMPCYDNPTYSNSFDVFIRGEEIISGAQRVHVPEFLAERAQACGIDVKTIETYIDSFRYGAPPHGGFGVGLERVVMLFCGLNNIRKTSLFPRDPQRIAP 545
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 30497044 30500803 + PI0025313.1 Cmetu04g3175 355619

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3175 545 CDD AspRS_cyto_N 97 197 - -
Cmetu04g3175 545 PANTHER ASPARTYL-TRNA SYNTHETASE 14 545 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmetu04g3175 545 Pfam OB-fold nucleic acid binding domain 98 182 IPR004365 GO:0003676
Cmetu04g3175 545 MobiDBLite consensus disorder prediction 22 44 - -
Cmetu04g3175 545 Gene3D Bira Bifunctional Protein; Domain 2 192 545 IPR045864 -
Cmetu04g3175 545 FunFam Aspartyl-tRNA synthetase, cytoplasmic 60 190 - -
Cmetu04g3175 545 NCBIfam aspartate--tRNA(Asn) ligase 89 545 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmetu04g3175 545 SUPERFAMILY Class II aaRS and biotin synthetases 215 544 IPR045864 -
Cmetu04g3175 545 Gene3D - 56 190 IPR012340 -
Cmetu04g3175 545 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 240 537 IPR006195 -
Cmetu04g3175 545 Hamap Aspartate--tRNA(Asp) ligase [aspS]. 81 545 IPR004523 GO:0000166|GO:0004815|GO:0005524|GO:0005737|GO:0006422
Cmetu04g3175 545 SUPERFAMILY Nucleic acid-binding proteins 62 190 IPR012340 -
Cmetu04g3175 545 Coils Coil 25 47 - -
Cmetu04g3175 545 Pfam tRNA synthetases class II (D, K and N) 220 539 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmetu04g3175 545 MobiDBLite consensus disorder prediction 1 50 - -
Cmetu04g3175 545 FunFam Aspartate--tRNA ligase, cytoplasmic 192 545 - -
Cmetu04g3175 545 CDD AsxRS_core 217 541 - -
Cmetu04g3175 545 PRINTS Aspartyl-tRNA synthetase signature 290 302 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmetu04g3175 545 PRINTS Aspartyl-tRNA synthetase signature 307 320 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmetu04g3175 545 PRINTS Aspartyl-tRNA synthetase signature 500 514 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cmetu04g3175 545 PRINTS Aspartyl-tRNA synthetase signature 460 476 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3175 K22503 - - csv:101222217 1045.03
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi4g255 Blo01g01355 . Bda01g00715 . . . . Bma01g02143 . . . . Car09g00436 . . . Cpe06g00372 . . . . . . . . . . . . . . Cone4ag1839 Cone7ag1745 . . Lsi04g02172 Csa03g04379 Chy04g00323 . . . . . . . . . Sed05g1660 . Cmo09g00498 . . . . . . Bhi09g02315 Tan01g3700 Cmetu04g3175 . Hepe01g2064 Mch11g0600 . . . . . . . . . . . Cme04g00363