Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3192 ATGGAGAAGAAGACTTATCCCATAGGTGAAGATTTTTATATTCTATATGAAGAGGTTGGGCAGGGTGTGAGCGCTTCAGTTCACCGTGCTCTTTGTAAACCTCTTAATGAGATCGTCGCCATCAAGATTCTCGATTTTGAGCGTGAGAATTGTGATCTGGCTAGCATTTATCGTGAAGTACAGACAATGATCTTGGTTGACCATCCGAATGTCCTTAAATCACACTGCTCCTTTGTCAATGGCCATGATTTGTGGATTGTTATGCCTTACATGTCTGGAGGTTCATGTCTTCACATATTGAAGGCTGCATATCCTGATGGTTTTGAGGAGGTGGTGATAGCAACAGTATTGCGAGATGTATTGAAGGGAGTTGAATATCTTCATAATCATGGACATATACATCGGGATATAAAAGCAGGGAATGTTCTTATTGATTCACGTGGTGCAATCAAGCTAGGAGATTTTGGTGTTTCTGCTTGCCTTTTTGATTCAGGTGATCGACAACGTGTGAGGAATACATTCGTGGGGACACCTTGCTGGATGGCACCTGAGGTTATGGAGCAATTAAATGGTTATGACTTCAAGGCTGACATCTGGTCTTTTGCCATAACTGGGTTAGAGCTTGCCCATGGCCATGCTCCTTTCTCAAAATATCCTCCGATGAAGGTACTGATGATGACCTTGCAAAATGCACCTCCAGGGCTTGATTATGAGAGGGATAAAAAATTTTCAAAGTCTTTCAAGCAGATGATTGCCAGTTGCTTGGTAAAAGATCCTTCAAAACGACCTTCTGCAAGTAAGCTGCTAAAGCATTCATTTTTTAAGCAAGCCCGGTCAAATGATTACATTGCACGCACCCTTTTGGAAGGGCTACCTGTTCTTGGTGATCGTATAAAGGCACTTAAGAGAAAGGAAGAAGATATGCTAGCACAAAAGAAAATGCCAGATGGAAAAAAAGAAGAATTATCACAGAATGAATATAAACGAGGCATCAGTGGATGGAACTTCAATCTTGATGATCTAAAGGCTCAGGCATCTCTGATCCAGGAATTTGAAGAGTCAATTAGTGAAATCAGTGAAGTAGGGAGCTCAAATTCATTGTCTGCACTTGATGTGCAAGAAAAGAAATTACAAGGCCAAAATTCTTCAGAAATTTCAGATATTGAAGAGAATGGCATGCTCCAGAGACAACCCTCCATGAAAGCAAATGACACAGTAAATGGTAAAAAATCTATCAATGAATCAACAATTATTGGTTCTTGCTCCCAACATCAATCTTCACCCCGCCAAGATAATCAAACTGAGAATGGCTCCAGCGAAGAGGTTAATTTGGAGAGCAGCAGAAGAATTTTGGGGAATACTCCTAATACTATCCAACATAAAAGAAGTATTTCTTCTAATACCTCTATTCAACAAGAAGCCAGTTTGCCTCTGAACAGAAGAGAGAGTTACGAGACAGAAAAGAATGGTGCAAATGGCAGTCCTGCAGTGGGAATGACTTCCCAGGCGGTAGATGATGTACTTTCTGATTCTCATTCTAAAGATCCCAAGTCATCATTAAGTCCAGCAATAATTGAAGAGGAACAGGATGAGAAAGCAAAGGCACCAGTTATTCAGCAGAAAGGGCGTTTCAAAGTTACTTCGGAGAGTGTCGATCTAGAAAAGGCTGCGGCATCCCCTATTCTGCAAAAAAGTCACAGTATGCAGGTGATTACCTCAAATTGTGCTACTCCTCTACCTTCTAATCTACCAACTCCTCTACTGACACCTCTACCTTCATCTGATGCTATACCAATTAATACTAGATCTTCTATGTTTCCAGTGTTGCACTCTGTTTTGCAGACAAATATTGTTCAAAGGGATGATATTTTGACTCTAATGAGGCAAATCTCAACTGGAGAATTTTCAGCTGATGGCGTAGTTGATGTCTCTGCGGCACATATAACAGCAACGGAGAAATCTTTGCTTGAAGCAGCTCATGAAAGGGAGAAGGATTTACTTAACGAAGTAACTGAGTTACAGTGGAGGATATTACGCGCGAGAGATGAAATCCAAAGATTAAAATTAAACAATGTGTGA 2079 40.69 MEKKTYPIGEDFYILYEEVGQGVSASVHRALCKPLNEIVAIKILDFERENCDLASIYREVQTMILVDHPNVLKSHCSFVNGHDLWIVMPYMSGGSCLHILKAAYPDGFEEVVIATVLRDVLKGVEYLHNHGHIHRDIKAGNVLIDSRGAIKLGDFGVSACLFDSGDRQRVRNTFVGTPCWMAPEVMEQLNGYDFKADIWSFAITGLELAHGHAPFSKYPPMKVLMMTLQNAPPGLDYERDKKFSKSFKQMIASCLVKDPSKRPSASKLLKHSFFKQARSNDYIARTLLEGLPVLGDRIKALKRKEEDMLAQKKMPDGKKEELSQNEYKRGISGWNFNLDDLKAQASLIQEFEESISEISEVGSSNSLSALDVQEKKLQGQNSSEISDIEENGMLQRQPSMKANDTVNGKKSINESTIIGSCSQHQSSPRQDNQTENGSSEEVNLESSRRILGNTPNTIQHKRSISSNTSIQQEASLPLNRRESYETEKNGANGSPAVGMTSQAVDDVLSDSHSKDPKSSLSPAIIEEEQDEKAKAPVIQQKGRFKVTSESVDLEKAAASPILQKSHSMQVITSNCATPLPSNLPTPLLTPLPSSDAIPINTRSSMFPVLHSVLQTNIVQRDDILTLMRQISTGEFSADGVVDVSAAHITATEKSLLEAAHEREKDLLNEVTELQWRILRARDEIQRLKLNNV 692
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 10644892 10654020 - PI0000440.1 Cmetu04g3192 355636

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3192 692 Gene3D Phosphorylase Kinase; domain 1 2 89 - -
Cmetu04g3192 692 MobiDBLite consensus disorder prediction 488 507 - -
Cmetu04g3192 692 FunFam Serine/threonine-protein kinase BLUS1 2 90 - -
Cmetu04g3192 692 MobiDBLite consensus disorder prediction 373 407 - -
Cmetu04g3192 692 Coils Coil 656 690 - -
Cmetu04g3192 692 ProSiteProfiles Protein kinase domain profile. 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3192 692 MobiDBLite consensus disorder prediction 419 535 - -
Cmetu04g3192 692 SMART serkin_6 13 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3192 692 Gene3D Transferase(Phosphotransferase) domain 1 94 327 - -
Cmetu04g3192 692 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 1 688 IPR047173 GO:0043539
Cmetu04g3192 692 CDD STKc_OSR1_SPAK 13 274 - -
Cmetu04g3192 692 MobiDBLite consensus disorder prediction 419 479 - -
Cmetu04g3192 692 SUPERFAMILY Protein kinase-like (PK-like) 12 275 IPR011009 -
Cmetu04g3192 692 Pfam Protein kinase domain 15 274 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3192 692 ProSitePatterns Protein kinases ATP-binding region signature. 19 42 IPR017441 GO:0005524
Cmetu04g3192 692 FunFam serine/threonine-protein kinase BLUS1 isoform X1 94 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3192 K08835 - - csv:101211076 1268.45
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3192 Cmetu-Chr4:10644892 Cmetu09g0153 Cmetu-Chr9:18993542 4.80E-157 dispersed
Cmetu04g3192 Cmetu-Chr4:10644892 Cmetu10g0076 Cmetu-Chr10:7068931 2.60E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu07g0934 . 1 693 MAP Kinase Kinase Kinase Kinase AT1G53165 63.1 3.9e-223 771.5
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT1G53165 53.1 3.5e-67 253.4
Cmetu07g0934 . 1 692 MAP Kinase Kinase Kinase Kinase AT3G15220 65.0 1.7e-231 799.3
Cmetu10g0076 . 270 530 MAP Kinase Kinase Kinase Kinase AT3G15220 51.5 1.6e-67 254.6
Cmetu10g0076 . 4 837 MAP Kinase Kinase Kinase Kinase AT1G69220 59.2 1.8e-240 829.3
Cmetu07g0934 . 23 268 MAP Kinase Kinase Kinase Kinase AT1G69220 51.8 3.2e-67 253.8
Cmetu09g0153 . 1 658 MAP Kinase Kinase Kinase Kinase AT5G14720 66.9 1.5e-251 865.9
Cmetu06g2431 . 32 385 MAP Kinase Kinase Kinase Kinase AT5G14720 50.1 2.2e-93 340.5
Cmetu06g0753 . 7 720 MAP Kinase Kinase Kinase Kinase AT4G24100 64.3 4.1e-247 851.3
Cmetu06g0753 . 11 721 MAP Kinase Kinase Kinase Kinase AT4G10730 64.6 8.6e-247 850.1
Cmetu04g3192 . 4 483 MAP Kinase Kinase Kinase Kinase AT1G70430 52.4 2.7e-132 469.5
Cmetu06g0753 . 3 369 MAP Kinase Kinase Kinase Kinase AT1G70430 57.0 1.0e-118 424.5
Cmetu04g3192 . 1 676 MAP Kinase Kinase Kinase Kinase AT1G79640 59.6 2.6e-216 748.8
Cmetu09g0153 . 1 328 MAP Kinase Kinase Kinase Kinase AT1G23700 58.6 1.8e-102 370.2
Cmetu04g3192 . 6 324 MAP Kinase Kinase Kinase Kinase AT1G23700 52.2 6.3e-87 318.5
Cmetu06g0753 . 17 306 MAP Kinase Kinase Kinase Kinase AT1G23700 51.2 5.5e-75 278.9
Cmetu06g2431 . 32 497 MAP Kinase Kinase Kinase Kinase AT4G14480 58.4 1.0e-140 497.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002203 1 4 3 2 3 1 2 1 1 2 1 1 3 2 2 3 2 5 2 1 2 2 2 2 1 1 2 4 2 2 62
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70424 PF00069 Pkinase 2.40E-58 CL0016 Cmetu PK