Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3193 ATGATGACACTTGAAGACTTCTTCACCTTGACTGAAATAAAAAATGGGCTTACGGCCCCATGTAGGGTTGAGGAATTGATCAATGTTATGCAAAAGGAGAAGGATTGTTTTGTGAAGAATGTTAGCGATGCAACTCGTCATTGGGCTGCTGTTGCAGGTGCTATTGCTGCTACGGAGAATAAAGATTGTCTTGATCTTTTTATCCAATTAGATGGACTTAGCTTCATTCAAAGATGGCTTAAGGATGCTCAAAGGTTTAGTAATGATACAAATGATAGCACCGTGGAAGAGTCTATCATTGTTTTGTTACAAGCACTTAAAAAGTTACATATAACTGCTGAGAAATCTATTTCTTCTGGGATTTTGTTTACTGTTAAGGGTCTTCATGAAAATACTGACCATGGCAAATCTAGGTTTGGGAAAGAACTGAGTGTCCTTCTTGATAGGTGGATGCAGGAGATTAATGATAAAGATTTGCTTCGTGATGCAGAAAACACTGTACATTTTGATGAAGAGAAGTTAAATCTTGTTGGTGGGGCAGGAAGGTCATCTCCTTCAGGTGCATCTGTTTCAAGAGAATTATCCAGTGATGGAAGACAAACAGCAGAACCTATTGGGGACAAGATATTATCCTCTGGAAGCCCTGATGCACTTCACCCAGATAAGATCGAGGATTCAAAGGTTCAATCTCCCAGAAACGAGCTCAACTCTCATTCAATTTCTGGAAATTCAGTTGTGAAAGAAAGATCTCCAGATCTAACAACGAACTCTGCTGTTATGTTGGCGCCAAGTGAGGATGTTTTGAAGAAGGATGAAACATCTCTATGTTCTGTTGGAGGAGGAGCCCCAGTTAGTGTGGCTTGTAGCTTCCCAGCTGCAAGGGAAGGCACCGATAATGAACAGTTGGCTGGTTTGAAAAAGTGTAATGAGTCACCAGAGCTTGAAAACCAAGTGAACAAGATTGATGGCTCTTCTGGTAGGTCATGCGTGACAGAGAAATCAGATAACTCTTCACATTCTCCCATGCAGGATCCTGGAACTGTTTTGGAAGGTTTTGATGCTGCAATTGGTGAAGAGTCTGCTAAAGAAGCCCCAGCTCAACAAGATAATGATGGTCTTGACGATGCTGGTGCCTGTCAGCGTAGTTCTAGTCTAGATAGTGAGAGAGTTTCCACATTAGAATCAGCAAGTGGGATGTCTGATAAAAAGACAAATTATGGTAGCATGCCTGTGTTCAAACCTACAGGCATAGATGCTGACCGCTATCGAAGTACTCTTCGGGATTTGTCTATGAATGGGAGTCTAGGAAAACTTGAGGAGCGTGGGCCTTCTTTTTCAAGGATGGAAGACTTTGGTGGAATAAGGAGAGACAGACAACGTCGGAGAAAGGAAGATGACGGTGGAATGACTAATTCTGTTTTTTCCAAACCGAAATTAAATCCCAAAACCTCAAGTATAATTGATAATAGGTCAGACATGGAACTTGATTATGGGATAGTTGATGCTCTGGAGGTTGCTCGGCAAGTTGCTCAAGAAGTAGAAAGAGAAGTGGTGGAATATAGAGAGCCATCCTGCAGCTCTTCTTCTGACAAAGTTTCTGATGGTGGAATCAGGCAGCTGGGTAAACCAGATACCATGACTGAAAAGCAGGATCTGCCAGCTGATCTACAAGAAAGGGAGGTCCAATCTGCAAAAAGTCACGTTGCTGAATCATATTCTGATGCAGAGACATGCTTAACCCATCCAGATAATTTAGATACCCAACCAGAAAATTTGAATGAAATGGAATCCTCCATGGTCACAGAAGCAGTTCGAGGGGGAGATGCAAGTACAGAAAAAGGATTTTGTGAAATTGATCTAAATCAAGACGTATTTAATGATGATGCAGAGCAGATAGCAACTCCAGTGTCTATACCTGTATCTGTTATCTCTGTTTCCAGACCAGCTGCTTCTTCTGTGTTGCCTCTAACACCTTTACAGTTTGAAGGGTCGCTTGGATGGAGAGGCTCTGCAGCCACTAGTGCTTTCCGGCCTGCTTCCCCACGTAAAGTTCCTGATAGCGATAGAACTTTTTCAAGTGGGGGAAATTCTGATAGTTCAAAGCAGAGGCAAGATTTTCTTGACATTGATTTGAATGTGGCCGAGACTGGAGAAGAAACCAGGAAGCAAAACCTAGGGTCATCTTTCCCACAACCTGGAGAGTTTTTAGTTGAAAGTGGACCAAGAAGATCTGGGGATTAA 2241 42.3 MMTLEDFFTLTEIKNGLTAPCRVEELINVMQKEKDCFVKNVSDATRHWAAVAGAIAATENKDCLDLFIQLDGLSFIQRWLKDAQRFSNDTNDSTVEESIIVLLQALKKLHITAEKSISSGILFTVKGLHENTDHGKSRFGKELSVLLDRWMQEINDKDLLRDAENTVHFDEEKLNLVGGAGRSSPSGASVSRELSSDGRQTAEPIGDKILSSGSPDALHPDKIEDSKVQSPRNELNSHSISGNSVVKERSPDLTTNSAVMLAPSEDVLKKDETSLCSVGGGAPVSVACSFPAAREGTDNEQLAGLKKCNESPELENQVNKIDGSSGRSCVTEKSDNSSHSPMQDPGTVLEGFDAAIGEESAKEAPAQQDNDGLDDAGACQRSSSLDSERVSTLESASGMSDKKTNYGSMPVFKPTGIDADRYRSTLRDLSMNGSLGKLEERGPSFSRMEDFGGIRRDRQRRRKEDDGGMTNSVFSKPKLNPKTSSIIDNRSDMELDYGIVDALEVARQVAQEVEREVVEYREPSCSSSSDKVSDGGIRQLGKPDTMTEKQDLPADLQEREVQSAKSHVAESYSDAETCLTHPDNLDTQPENLNEMESSMVTEAVRGGDASTEKGFCEIDLNQDVFNDDAEQIATPVSIPVSVISVSRPAASSVLPLTPLQFEGSLGWRGSAATSAFRPASPRKVPDSDRTFSSGGNSDSSKQRQDFLDIDLNVAETGEETRKQNLGSSFPQPGEFLVESGPRRSGD 746
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 29701810 29707290 - PI0004805.1 Cmetu04g3193 355637

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 314 416 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 520 588 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 177 254 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 182 198 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 380 404 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 544 565 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 314 344 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 686 702 - -
Cmetu04g3193 746 ProSiteProfiles TFIIS N-terminal domain profile. 74 157 IPR017923 -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 473 487 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 442 469 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 434 487 - -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 671 746 - -
Cmetu04g3193 746 PANTHER TRANSCRIPTION ELONGATION FACTOR (TFIIS) FAMILY PROTEIN-RELATED 2 745 - -
Cmetu04g3193 746 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 21 159 IPR035441 -
Cmetu04g3193 746 MobiDBLite consensus disorder prediction 232 254 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3193 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3193 Cmetu-Chr4:29701810 Cmetu04g2192 Cmetu-Chr4:9162858 2.60E-07 transposed
Cmetu04g3193 Cmetu-Chr4:29701810 Cmetu02g0760 Cmetu-Chr2:24135098 2.60E-07 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g1137 . Blo12g00881 . . . . Bma04g00250 Bma01g02376 . . Cma01g01979 Cma09g00097 Car01g01551 . . Cpe06g00060 . . . . . . . . . . . . . . . . . Cone17ag1414 Cone20ag0069 Lsi04g01755 Csa03g04289 Chy04g00407 . . . . . . . . . Sed01g2483 Cmo01g02038 Cmo09g00094 . . . Car09g00085 . Cpe02g00065 Bhi09g02076 Tan01g5035 Cmetu04g3193 . Hepe01g1606 Mch11g0106 . Cla05g01862 Cam05g1991 Cec05g2003 Cco05g2061 Clacu05g1983 Cmu05g1864 Cre05g1988 . . . Cme04g00459