Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3241 ATGGCGGGGCTTGAGGAACTCAAGAAGAAACTTACTCCATTGTTTGATGCTGAAAAGGGGCTATCTATGGACTCCCCTGTGGACCCGTCTGATTCTTATACGTTTTCAGACAATGGGACTGTTAATTTGCTAAGCCGATCGTATGGGGTTTATAATTTCAATGAGCTAGGGTTACAAAAATGCACATCTTGGCTGGCCGATGATTCGGGGAGCAGTGAGAGGACATATCGATGTGCTTCCCGTGAAATGAGGATATTTGGAGCCATTGGTAGTGGTGCTAGCAGTGTTGTTCAGAGAGCTATCCACATTCCTGCTCATCGAATCATGGCACTAAAGAAGATTAATATCTTTGAAAAGGAGAAAAGACAGCAGCTTCTTACTGAAATACGGACACTATGTGAAGCGCCCTGTTCTGAGGGTCTTGTGGAGTTTCATGGAGCATTTTATACCCCTGATTCTGGGCAAATAAGCATCGCTTTGGAATACATGGATGGAGGGTCATTGGCAGATGTCCTGCGTTTGAAAAAATGTATACCTGAGCCTGTCCTTTCGTCTATGTTTCAGAAGCTTCTTCAAGGTTTAAGTTACCTGCATGGAGTAAGACATTTGGTTCACAGAGATATAAAGCCAGCTAATTTACTTGTAAATCTAAAGGGTGAAGCAAAGATTACGGATTTTGGCATAAGTGCTGGCTTAGAGAATTCGATGGCAATGTGTGCTACTTTTGTTGGAACTGTCACATACATGTCACCGGAGCGAATTCGAAATGAGAGCTATTCTTATCCAGCTGACATTTGGAGCCTTGGGCTTGCACTCTTTGAGTGTGGTACTGGTGAATTTCCATATTCAGCTACTGAAGGTCTAGTGAACCTTATGTTACAGATTTTGGATGACCCATCTCCATCTCCATCAAAACATAAGTTTTCGCCGGAGTTTTGCTCGTTTGTCGATGCCTGCTTGCAGAAAGATGCAGATGCTAGGCCAACAGCAGAGCAGCTGCTTTCACACCCATTTATCAAAAAATATGAGAATGAACAAGTAGACTTAGCAGCATTTGTCCAGAATGTGTTTGATCCAATACAGAGGATGAAGGACTTAGCAGATATGTTGACAATTCATTATTACTTGCTTTTTGATGGACCTGATGACTTCTGGCACCATACAAAAGCTTTATACCATGAAAGCTCAACTTTAAGTTTCTCAGGGAAGCAATTTTCTGGTCCAAATGATATCTTTGGCAAACTATCAGAGATTCGAAGTACATTAGCAGGAGATTGGCCTCTTGAAAAACTAGTTCACGTCGTCGAAAAACTCCAATGTCGAGCTCACGGTCGGGATGGAGTTGCTATAAGGGTGTCAGGATCCTGCATCCTTGGGAACCAGTTTCTCATATGTGGAGACGGTGTACAAGTAGAGGGACTGCCAAATTTTAAGGATCTCTCCATTGACATGGAAAGCAAGAAAATGGGATCCTTCCGGGAGCAGTTCATCATTGAACCGAGCAATCTCATCGGTCGTTATTTCATTGCTAAACAAGAGCTTTATATAATCCAATAG 1557 42.58 MAGLEELKKKLTPLFDAEKGLSMDSPVDPSDSYTFSDNGTVNLLSRSYGVYNFNELGLQKCTSWLADDSGSSERTYRCASREMRIFGAIGSGASSVVQRAIHIPAHRIMALKKINIFEKEKRQQLLTEIRTLCEAPCSEGLVEFHGAFYTPDSGQISIALEYMDGGSLADVLRLKKCIPEPVLSSMFQKLLQGLSYLHGVRHLVHRDIKPANLLVNLKGEAKITDFGISAGLENSMAMCATFVGTVTYMSPERIRNESYSYPADIWSLGLALFECGTGEFPYSATEGLVNLMLQILDDPSPSPSKHKFSPEFCSFVDACLQKDADARPTAEQLLSHPFIKKYENEQVDLAAFVQNVFDPIQRMKDLADMLTIHYYLLFDGPDDFWHHTKALYHESSTLSFSGKQFSGPNDIFGKLSEIRSTLAGDWPLEKLVHVVEKLQCRAHGRDGVAIRVSGSCILGNQFLICGDGVQVEGLPNFKDLSIDMESKKMGSFREQFIIEPSNLIGRYFIAKQELYIIQ 518
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 9670669 9676020 + PI0022582.1 Cmetu04g3241 355685

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3241 518 FunFam mitogen-activated protein kinase kinase 3 56 164 - -
Cmetu04g3241 518 ProSiteProfiles Protein kinase domain profile. 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3241 518 Gene3D Transferase(Phosphotransferase) domain 1 165 365 - -
Cmetu04g3241 518 PANTHER DUAL SPECIFICITY MITOGEN-ACTIVATED PROTEIN KINASE KINASE 5-RELATED 21 394 - -
Cmetu04g3241 518 FunFam Mitogen-activated protein kinase kinase 3 363 517 - -
Cmetu04g3241 518 FunFam mitogen-activated protein kinase kinase 3 165 361 - -
Cmetu04g3241 518 Gene3D Phosphorylase Kinase; domain 1 59 164 - -
Cmetu04g3241 518 SUPERFAMILY Protein kinase-like (PK-like) 85 370 IPR011009 -
Cmetu04g3241 518 Gene3D - 366 516 - -
Cmetu04g3241 518 SUPERFAMILY NTF2-like 364 516 IPR032710 -
Cmetu04g3241 518 SMART serkin_6 83 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3241 518 ProSitePatterns Serine/Threonine protein kinases active-site signature. 203 215 IPR008271 GO:0004672|GO:0006468
Cmetu04g3241 518 Pfam Protein kinase domain 87 339 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu04g3241 518 ProSiteProfiles Nuclear transport factor 2 domain profile. 366 516 IPR018222 -
Cmetu04g3241 518 CDD PKc_MAPKK_plant_like 84 344 - -
Cmetu04g3241 518 ProSitePatterns Protein kinases ATP-binding region signature. 89 112 IPR017441 GO:0005524
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3241 K20607 - - csv:101217978 1018.84
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3241 Cmetu-Chr4:9670669 Cmetu05g0766 Cmetu-Chr5:481568 1.10E-65 dispersed
Cmetu04g3241 Cmetu-Chr4:9670669 Cmetu05g0779 Cmetu-Chr5:192669 4.00E-63 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi11g254 Blo01g00529 . Bda01g02038 . . Bpe02g02226 . . . . Cma05g01373 Cma12g01275 Car05g01287 Car12g01246 . . . . . . . . . . Cla11g00183 Cam11g0213 Cec11g0214 . . . . . . . . . Csa02g00082 Chy05g01408 . . . . . . . Bma01g00211 . Sed08g1406 Cmo05g01376 . . . . . Cpe11g01143 . Bhi06g01689 Tan08g0109 Cmetu04g3241 . . . . . . . . . . . Lsi11g00218 . . Cme05g02012
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0779 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 65.7 9.2e-125 443.7
Cmetu02g0978 . 28 338 MAP Kinase Kinase Gene Family AT4G26070 66.3 3.6e-121 431.8
Cmetu05g0766 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 2.1e-108 389.4
Cmetu02g0978 . 1 311 MAP Kinase Kinase Gene Family AT4G29810 65.1 5.7e-119 424.5
Cmetu05g0779 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.4e-117 419.9
Cmetu05g0766 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.7e-110 396.4
Cmetu04g3241 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.5 5.0e-228 787.3
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.5 5.1e-129 458.0
Cmetu12g1705 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 3.8e-84 308.9
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 67.8 6.9e-128 454.1
Cmetu12g1705 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.1e-84 309.7
Cmetu05g0766 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 6.1e-172 600.5
Cmetu05g0779 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.3 2.4e-107 386.0
Cmetu02g0978 . 7 337 MAP Kinase Kinase Gene Family AT5G56580 53.6 2.1e-103 372.9
Cmetu12g1705 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 2.4e-108 389.0
Cmetu04g0417 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 52.9 9.3e-76 280.8
Cmetu12g1705 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.3e-82 301.2
Cmetu12g1705 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.1e-113 406.8
Cmetu04g0417 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 2.9e-77 285.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009007 1 3 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70426 PF00069 Pkinase 1.30E-59 CL0016 Cmetu PK