Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu04g3254 ATGGGAAAGCATGGACCTTGCTGTCACTGTGGAGTTACAAGCACTCCTCTTTGGCGTAATGGGCCTCCCGATAAACCAGTATTATGCAATGCATGTGGATCCCGATGGAGAACAAAAGGAACACTTGCAAACTATACCCCTTTGCACGCTCGGACTGATCCCGATGAATATGAAGACCACAGGGTTTCCAGGATGAAGAGCATTTCAATAAACAAAAACAAAGAAGTTAAACTGCTAAAAAGAAAGCTGCAACAAGCAGATGGATCAATTGGGTGGATGATTCCCGACCAAGGTCAGGGTTATCATAGAGTAGTGGATGAAGATACAAGCAATAGATCCAGTTCGGGATCGGCCATATCTAATCCTGAGAGTTGTGCCCATTTCAGCAGTGCGGATGCTAGTGATTTGACAGGTCCAGCTCAGTCAATAGTGTGGGAGTCCATGGTGCCTTCCAGGAAGCGGACCTGTGTGAATCGTCCAAAGCAGTCCCCGGTTGAAAAACTAACTAAAGATCTATATAGTATCTTACGTGAGCAGAGATCTTCCTATTTCTCAGAAGCTTCTGAGGATGATTTGCTTTTCGAGAGTGAAAAACCTATGGTCTCTGTTGAGATAGGTCATGGAAGTATTCTCATTAGGCATCCAAGCTCAATAGCTCGAGAAGAGGAATCTGAAGCTAGCTCAATTTCAGTTGATAACAAGCAATGCTTGGTAAATGAGGTCTATTCACCCCATTCTACAACTGTTCTTGTATGTAGTGAAAACAAGGGTATGAATTTCCCAACATCTAGGATTGGAAAGATGAAGAATCCTTATGGATCAGGAGTACAACAAGAACAAATTAAAAGGGACGACTCGCATCACGAATGCTTACAAATTCTTGGAAACCATAACTCGCCCTTATGTGATGTAGATATAAATGACATTATAAACTTCGAAGAGTTTGCAAGACAACTAACAAATGAAGAGCAACAGCAATTAATGAAGTACCTACCACAGATTGATATTGCTGAATTTCCCGAGACCCTCAAGAGCATGTTTGATAGCCCCTATTTCAAGGAGAACTTAACTTCCTTCCAACAACTACTTAGCGAGGGCGTTTTCGATGTTTCCTTCCTTGGAACAAAGGTCGAAGACTGCAAAACCTTGAAAAGGCTTGTCTTGTATAATTCTTCAAAATCCAAATGGGTTGAACGCTATCATCAACTGAAGAAATGTAAAAATGTTAGCAAAGGACCTTTTCTTTCCCATGCCAATGCGTCGGTGTCGAGTAACTTCACAAATGTGAAGCAGTTGTGTGAGAGCTACAATCAAAATATTCCAGAGGCAAAGACCATCTTGAAGAGTCCCAAAAGGTTGGTGATGAAGGAAAATAAGGATCCTGGAGAGAATGATGGATCATGCTTCAGTCCTAGAAGTTTATTTGCTTTGCCTCCTGATGGAAGCTCCCTCATGCTTGAATCCTTACATTTCGTCGAAGAAAGTTCAGATCAAGATCTATTGCTTGATGTACGGTCAAATAGTTCATTTCCACAAGCCGAGCTCCTTCACCCGACCTCACGTTCGGGTGGTAGGCAGGCCAGCACATGTAGTAGCTCAGTTCACCCACACCTTGTTCATCACTAA 1626 42.5 MGKHGPCCHCGVTSTPLWRNGPPDKPVLCNACGSRWRTKGTLANYTPLHARTDPDEYEDHRVSRMKSISINKNKEVKLLKRKLQQADGSIGWMIPDQGQGYHRVVDEDTSNRSSSGSAISNPESCAHFSSADASDLTGPAQSIVWESMVPSRKRTCVNRPKQSPVEKLTKDLYSILREQRSSYFSEASEDDLLFESEKPMVSVEIGHGSILIRHPSSIAREEESEASSISVDNKQCLVNEVYSPHSTTVLVCSENKGMNFPTSRIGKMKNPYGSGVQQEQIKRDDSHHECLQILGNHNSPLCDVDINDIINFEEFARQLTNEEQQQLMKYLPQIDIAEFPETLKSMFDSPYFKENLTSFQQLLSEGVFDVSFLGTKVEDCKTLKRLVLYNSSKSKWVERYHQLKKCKNVSKGPFLSHANASVSSNFTNVKQLCESYNQNIPEAKTILKSPKRLVMKENKDPGENDGSCFSPRSLFALPPDGSSLMLESLHFVEESSDQDLLLDVRSNSSFPQAELLHPTSRSGGRQASTCSSSVHPHLVHH 541
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 33234882 33241156 - PI0029092.1 Cmetu04g3254 355698

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu04g3254 541 Gene3D - 294 386 IPR038108 -
Cmetu04g3254 541 MobiDBLite consensus disorder prediction 107 132 - -
Cmetu04g3254 541 MobiDBLite consensus disorder prediction 110 132 - -
Cmetu04g3254 541 Gene3D - 4 84 IPR013088 GO:0006355|GO:0008270
Cmetu04g3254 541 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 406 IPR044867 -
Cmetu04g3254 541 ProSiteProfiles GATA-type zinc finger domain profile. 7 40 IPR000679 GO:0006355|GO:0043565
Cmetu04g3254 541 Pfam GATA zinc finger 7 41 IPR000679 GO:0006355|GO:0043565
Cmetu04g3254 541 MobiDBLite consensus disorder prediction 514 535 - -
Cmetu04g3254 541 CDD ZnF_GATA 6 54 IPR000679 GO:0006355|GO:0043565
Cmetu04g3254 541 MobiDBLite consensus disorder prediction 514 541 - -
Cmetu04g3254 541 Pfam Asx homology domain 286 369 IPR028020 -
Cmetu04g3254 541 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 4 45 - -
Cmetu04g3254 541 SMART GATA_3 1 53 IPR000679 GO:0006355|GO:0043565
Cmetu04g3254 541 PANTHER OSJNBB0038F03.10 PROTEIN 1 536 IPR044589 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu04g3254 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3254 Cmetu-Chr4:33234882 Cmetu06g0416 Cmetu-Chr6:29068628 9.20E-196 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu03g0192 . 108 359 C2C2-Gata Transcription Factor Family AT5G25830 58.5 1.8e-69 260.0
Cmetu07g0573 . 15 297 C2C2-Gata Transcription Factor Family AT5G66320 52.2 8.1e-65 244.6
Cmetu04g1399 . 104 267 C2C2-Gata Transcription Factor Family AT4G36240 54.2 1.5e-41 166.8
Cmetu03g0192 . 110 359 C2C2-Gata Transcription Factor Family AT4G32890 50.5 2.3e-58 223.0
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT4G17570 53.7 1.9e-137 486.5
Cmetu04g3254 . 1 517 C2C2-Gata Transcription Factor Family AT4G17570 51.9 1.9e-134 476.5
Cmetu06g0416 . 1 515 C2C2-Gata Transcription Factor Family AT5G47140 50.5 1.4e-118 423.7
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7885 PF13919 ASXH 1.40E-08 No_clan Cmetu TF