Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0010 ATGCAGAATCATCATCATCAGCACATGAACTTGGTTTTGTCTACTGATGCAAAACCAAGGTTAAAATGGACTCATGAGCTTCATCAAAGATTTGTTGAAGCTGTCAATCATCTTGGTGGAGCAGATAAAGCTACACCTAAGAGTTTGATGAGAGTTATGGGAATCACTGGCCTTAGTCTTTACCATCTCAAAAGCCATTTACAGAAATACAGATTGGGGAAAAGCCAGCAAGCTGAAACCAATGCTCAACTCAAACTAGAAGAGATGCAGAGAAAAAGTGGGCATTTTGATGGTGAGGAAAACAAGGATAGAACTCAAAACCAAAACAAAACAGAGAACATGAAGATATCAGAAGCTCTTGAAATGCAATTAGAAGTACAGAAGAGACTACAAGAACAAATAGAGGTACAAAAACATTTGCAGCTGAGAATCGAAGCACAGGGGAAGTATTTAAAGACAGTATTAAGAAAAGCACAAGAGACAATTGCAGGGTACGGATATTGTTCTGAAGCACTTGAAGAAGCCAAAGCAGAGCTTTCTCAATTGGCTTCAATGGTGAGTTCTGGGTGTCAGAGCTCTTCTTTATCAGAATTGACTGACTCAACAGAACTTAATTTTAAAGGGATTGAAAGAATTGGAAGAAGAATGTGTTCCATTGAAAGCTCTTTAACATCTTCAGAGACCTCAGAGGAGGCCCCAATCACGAAGAAGAGAAAAGGAAAAGAAAAAGAAGAGAGTAGCTCTGTTTGTGAGGAGGACGAGGAATTAAGAATGATGGACTTGAATGATACAGCAATTGGATTTGGATCAAAGTTGATTCAGTTTCTTTAA 831 38.51 MQNHHHQHMNLVLSTDAKPRLKWTHELHQRFVEAVNHLGGADKATPKSLMRVMGITGLSLYHLKSHLQKYRLGKSQQAETNAQLKLEEMQRKSGHFDGEENKDRTQNQNKTENMKISEALEMQLEVQKRLQEQIEVQKHLQLRIEAQGKYLKTVLRKAQETIAGYGYCSEALEEAKAELSQLASMVSSGCQSSSLSELTDSTELNFKGIERIGRRMCSIESSLTSSETSEEAPITKKRKGKEKEESSSVCEEDEELRMMDLNDTAIGFGSKLIQFL 276
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11969714 11971804 + PI0014287.1 Cmetu05g0010 355714

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0010 276 SUPERFAMILY Homeodomain-like 17 73 IPR009057 -
Cmetu05g0010 276 FunFam Myb family transcription factor 17 75 - -
Cmetu05g0010 276 MobiDBLite consensus disorder prediction 220 252 - -
Cmetu05g0010 276 Pfam Myb-like DNA-binding domain 20 71 IPR001005 -
Cmetu05g0010 276 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 4 259 IPR044848 GO:0003700
Cmetu05g0010 276 MobiDBLite consensus disorder prediction 92 109 - -
Cmetu05g0010 276 NCBIfam myb-like DNA-binding domain, SHAQKYF class 18 73 IPR006447 GO:0003677
Cmetu05g0010 276 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 15 75 IPR017930 -
Cmetu05g0010 276 MobiDBLite consensus disorder prediction 231 252 - -
Cmetu05g0010 276 Pfam MYB-CC type transfactor, LHEQLE motif 114 161 IPR025756 -
Cmetu05g0010 276 Gene3D - 17 75 - -
Cmetu05g0010 276 MobiDBLite consensus disorder prediction 92 111 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0010 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0010 Cmetu-Chr5:11969714 Cmetu06g0187 Cmetu-Chr6:2607479 1.80E-33 dispersed
Cmetu04g0249 Cmetu-Chr4:10207678 Cmetu05g0010 Cmetu-Chr5:11969714 2.30E-39 transposed
Cmetu10g1133 Cmetu-Chr10:11930493 Cmetu05g0010 Cmetu-Chr5:11969714 4.80E-13 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu06g1509 . 241 442 G2-like Transcription Factor Family AT5G16560 57.1 3.1e-47 186.4
Cmetu04g1719 . 178 383 G2-like Transcription Factor Family AT5G16560 50.9 1.4e-39 161.0
Cmetu04g2692 . 1 162 G2-like Transcription Factor Family AT5G42630 59.3 1.6e-37 153.3
Cmetu02g0350 . 4 340 G2-like Transcription Factor Family AT2G03500 50.3 3.3e-79 292.7
Cmetu10g0277 . 19 255 G2-like Transcription Factor Family AT1G25550 51.0 3.8e-52 202.2
Cmetu03g2101 . 20 258 G2-like Transcription Factor Family AT1G25550 54.8 2.5e-51 199.5
Cmetu12g0038 . 1 270 G2-like Transcription Factor Family AT3G46640 51.3 5.8e-60 228.4
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT5G05090 55.4 1.5e-74 276.6
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT5G05090 54.5 4.7e-68 255.0
Cmetu06g0187 . 12 315 G2-like Transcription Factor Family AT4G13640 57.1 8.4e-66 247.7
Cmetu04g1868 . 88 396 G2-like Transcription Factor Family AT3G04450 50.2 2.3e-58 223.4
Cmetu06g0187 . 12 267 G2-like Transcription Factor Family AT3G24120 65.4 2.9e-82 302.4
Cmetu11g1511 . 22 194 G2-like Transcription Factor Family AT3G24120 57.1 5.3e-44 175.3
Cmetu04g0438 . 29 193 G2-like Transcription Factor Family AT3G24120 58.0 1.6e-43 173.7
Cmetu01g1460 . 16 176 G2-like Transcription Factor Family AT3G24120 59.1 1.5e-41 167.2
Cmetu05g0010 . 3 252 G2-like Transcription Factor Family AT1G69580 51.6 6.0e-52 201.8
Cmetu01g1460 . 1 394 G2-like Transcription Factor Family AT1G79430 52.1 2.2e-84 309.7
Cmetu11g1511 . 1 362 G2-like Transcription Factor Family AT1G79430 52.0 4.0e-78 288.9
Cmetu06g0187 . 39 203 G2-like Transcription Factor Family AT1G79430 63.6 7.8e-42 168.3
Cmetu04g1972 . 84 300 G2-like Transcription Factor Family AT2G01060 65.6 1.2e-54 210.3
Cmetu08g1522 . 1 301 G2-like Transcription Factor Family AT3G10760 62.6 2.9e-91 332.4
Cmetu04g2442 . 1 285 G2-like Transcription Factor Family AT3G10760 58.2 4.7e-81 298.5
Cmetu08g1522 . 1 191 G2-like Transcription Factor Family AT2G40970 63.8 2.8e-62 235.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004564 2 2 1 2 1 1 2 0 2 1 1 1 2 1 1 2 1 3 2 1 1 1 1 1 1 1 1 2 1 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7889 PF00249 Myb_DNA-binding 7.20E-07 CL0123 Cmetu TF