Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0163 ATGAACATGTTGTTTGAGCAGCAGCTGCAGCAGCCACAGGAGGACGTGGGTGTGACGAGGAGGACGGTGACCGTGACCATGCCTGTGACGATGCCCGGGGCCGGGGTGGCGCCGGCTGCCGAGAGAAAGAGGAGGGTGGTGGAGGAAGAGAGACTTGAGATTGTGGATCTGAGTGGCATTTCTTTGAACTCTTTGCCAAATCCTAATCTGAATTTGGCCACCATTTGCAAATTAGACCTCTCTAATAATAACCTTCAGAGTATTCCAGAGTCTCTTATTGCAAGATTGTTAAACGTTGTCGTATTAGACGTTCACTCAAACCAATTGAAATGTCTTCCTCATTCTATTGGTTGTTTGGGTAAGCTCAAGACTTTAAATGTCTCTGGCAATCTCATTGCTTCCCTTCCCAAAACTCTTGTGGATTGCAGATCCTTAGAAGAATTAAACGTGAATTTCAACAAATTAATGAAACTTCCAGATGCATTAGGGTTTGAACTAACAAATCTAAAGAAACTCTCGGTAAACTCCAATAAGCTAATTTATCTTCCCCACTCTATCTCCCACCTCACAAACCTTCGTATTCTCGATGCCCGCCTGAACTGCCTTACCTCTCTCCCTGATGATCTTGAAAATCTAATTAAGCTAGAAGTCTTGAATGTCAGCCAAAACTTCCACCACCTTCAGACTTTGCCTTATTCTATTGGCCTCTTGTTGTCTTTAGTTGAACTTGACATTAGCTACAATAGAATAACCACTCTCCCTGAGTCTATTGGCTGCCTTAAAAGGCTTCACAAACTTTGTGTCGATGGCAATCCTTTATCATCTCCACCCCCACTTGTGTTCGAACAAGGGCTACATGCTGTTAAGGAGTATTTGAGTGAGAAGATGAATGCAGGACATCAAAACCCACATAAGAAGAAGTCATGGGTGGGGAAGCTAGTTCGATATGGAACCTTCAATGGCGGATATGGGTACTTTAGAACTACTGAATCACGTGAGGATCGAGAAGCCTTCATGTGGTCTCAATATCGCTCCATCGATGGTCTCACTTCGCCGAGGTACACTGGAATGTTCTCGGCACGCCGCTTTTTCACAACACGGGGGTATTTCACTCGATGA 1119 44.59 MNMLFEQQLQQPQEDVGVTRRTVTVTMPVTMPGAGVAPAAERKRRVVEEERLEIVDLSGISLNSLPNPNLNLATICKLDLSNNNLQSIPESLIARLLNVVVLDVHSNQLKCLPHSIGCLGKLKTLNVSGNLIASLPKTLVDCRSLEELNVNFNKLMKLPDALGFELTNLKKLSVNSNKLIYLPHSISHLTNLRILDARLNCLTSLPDDLENLIKLEVLNVSQNFHHLQTLPYSIGLLLSLVELDISYNRITTLPESIGCLKRLHKLCVDGNPLSSPPPLVFEQGLHAVKEYLSEKMNAGHQNPHKKKSWVGKLVRYGTFNGGYGYFRTTESREDREAFMWSQYRSIDGLTSPRYTGMFSARRFFTTRGYFTR 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 6463156 6467230 + PI0022107.1 Cmetu05g0163 355867

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0163 372 SMART LRR_typ_2 166 188 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 189 212 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 260 283 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 72 95 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 96 118 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 143 165 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 119 142 IPR003591 -
Cmetu05g0163 372 SMART LRR_typ_2 237 259 IPR003591 -
Cmetu05g0163 372 Gene3D Ribonuclease Inhibitor 34 162 IPR032675 -
Cmetu05g0163 372 Pfam Leucine rich repeat 143 197 IPR001611 GO:0005515
Cmetu05g0163 372 Pfam Leucine rich repeat 77 132 IPR001611 GO:0005515
Cmetu05g0163 372 ProSiteProfiles Leucine-rich repeat profile. 239 260 IPR001611 GO:0005515
Cmetu05g0163 372 SMART LRR_bac_2 189 208 - -
Cmetu05g0163 372 SMART LRR_bac_2 237 256 - -
Cmetu05g0163 372 SMART LRR_bac_2 166 185 - -
Cmetu05g0163 372 SMART LRR_bac_2 260 279 - -
Cmetu05g0163 372 SMART LRR_bac_2 142 161 - -
Cmetu05g0163 372 SMART LRR_bac_2 119 138 - -
Cmetu05g0163 372 SMART LRR_bac_2 212 233 - -
Cmetu05g0163 372 SMART LRR_bac_2 72 91 - -
Cmetu05g0163 372 PANTHER LEUCINE-RICH REPEAT SERINE/THREONINE-PROTEIN KINASE 1 50 223 - -
Cmetu05g0163 372 Gene3D Ribonuclease Inhibitor 163 293 IPR032675 -
Cmetu05g0163 372 ProSiteProfiles Leucine-rich repeat profile. 74 95 IPR001611 GO:0005515
Cmetu05g0163 372 SUPERFAMILY L domain-like 52 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0163 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g1569 Cmetu-Chr2:22006780 Cmetu05g0163 Cmetu-Chr5:6463156 6.10E-33 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g820 . . Bda06g00618 Bda15g00540 . . . Bma12g01054 . . Cma10g00093 Cma11g00070 Car10g00082 Car11g00062 Sed08g0451 . Cpe04g01581 Bhi02g00603 Tan09g2304 Cmetu05g0163 . . . . Cla06g01699 Cam06g1886 Cec06g1935 Cco06g1939 Clacu06g1842 Cmu06g1784 . . . Cone13ag0167 Cone19ag0164 . . . . Blo13g00144 Blo15g00251 . . Bpe07g00858 . . Bma08g00083 . Cmo10g00097 Cmo11g00072 . . . . . Cpe18g00869 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002747 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 2 3 2 1 57