Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0340 ATGGCTCGGGACGGGCATGTAGTGCCGGTTGATCCACAGACGGCGCTTACTGTGAAGAAGAAGAAACAATCTTCTCGGAATTGGATTTTACTGGATTGTACGGGCCAAGGGACCGTCCTTGATGTCGATAAGCATGCTATTATGCATCGAGTTCAAATTCATGCTCGTGACCTTCGGATTATTGATCCTTTGCTTTCTTATCCCTCCACGATTTTGGGGCGTGAGAGGGCCATTGTTCTTAATCTCGAGCATATAAAGGCGATCATTACTGCTGATGAGGTTTTGCTTAGAGATCCGACAGATGAACACGTCCTCCCTGTGGTTGAGGAGCTTCAGAGGCGACTGCCTCCTTCTAATGCCTTTCAGTTTCAAGTTCAAGGAGATGGTAAAGAGTATCAGAGTGGCCAACAAGATGGTGAAGCTGAAGAAGATGACTCGCCATTTGAATTTCGTGCCCTTGAAGTAGCGTTGGAAGCTATATGTAGTTTTCTTGCAGCACGGACAACTGAACTGGAGACTGCTGCTTATCCTGCCTTGGATGAGCTTACCGCCAAGATTAGTAGCCGCAACTTGGACAGAGTTCGTAAATTGAAGAGTGCAATGACCAGGTTGACTGCGAGGGTTCAAAAGGTAAGAGATGAGCTTGAACAATTACTGGACGACGATGATGACATGGCAGACCTTTACTTGTCAAGAAAGATGAGCTCATCCTCTCCTGTAAGTGGTTCTGGTCCTGCCAATTGGTTTCCTGCCTCTCCTACCATTGGTTCAAAGATCTCAAGAGCAAGCAGAGCAAGTGTTGCAACTGTACGTGGGGACGAGGATGACATCGAGGAACTTGAAATGCTGCTGGAGGCTTACTTTATGCAAATTGATGGTACATTGAACAAATTAACTACTCTGCGAGAATATATTGATGACACAGAAGATTATATTAATATCCAGCTTGACAATCACCGAAATCAACTCATTCAGTTGGAGCTCTTTTTAAGTTCTGGTACTGTTTGTTTGTCTATCTATTCTTTGGTGAGTGCAATATTCGGCATGAACATTCCTTACACTTGGAATGAAGATTACGGATACATGTTTAAATGGGTTGTCATTGTTGCTGGATTTGCTTGCGCGGTGTTGTTCATCACAATTATTTATTATGCTCGCTACAAAGGTTTGGTGGGATCTTGA 1182 44.16 MARDGHVVPVDPQTALTVKKKKQSSRNWILLDCTGQGTVLDVDKHAIMHRVQIHARDLRIIDPLLSYPSTILGRERAIVLNLEHIKAIITADEVLLRDPTDEHVLPVVEELQRRLPPSNAFQFQVQGDGKEYQSGQQDGEAEEDDSPFEFRALEVALEAICSFLAARTTELETAAYPALDELTAKISSRNLDRVRKLKSAMTRLTARVQKVRDELEQLLDDDDDMADLYLSRKMSSSSPVSGSGPANWFPASPTIGSKISRASRASVATVRGDEDDIEELEMLLEAYFMQIDGTLNKLTTLREYIDDTEDYINIQLDNHRNQLIQLELFLSSGTVCLSIYSLVSAIFGMNIPYTWNEDYGYMFKWVVIVAGFACAVLFITIIYYARYKGLVGS 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18898032 18903094 - PI0009978.1 Cmetu05g0340 356044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0340 393 PANTHER RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL 17 391 IPR039204 -
Cmetu05g0340 393 MobiDBLite consensus disorder prediction 126 145 - -
Cmetu05g0340 393 Pfam CorA-like Mg2+ transporter protein 270 380 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cmetu05g0340 393 Gene3D Magnesium transport protein CorA, transmembrane region 105 323 - -
Cmetu05g0340 393 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 329 381 IPR045863 -
Cmetu05g0340 393 Coils Coil 194 221 - -
Cmetu05g0340 393 CDD Mrs2_Mfm1p-like 28 390 IPR039204 -
Cmetu05g0340 393 FunFam Magnesium transporter MRS2-1 16 99 - -
Cmetu05g0340 393 Gene3D - 14 99 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0340 K16075 - - csv:101203841 711.449
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g0910 Cmetu-Chr4:10597145 Cmetu05g0340 Cmetu-Chr5:18898032 3.70E-89 dispersed
Cmetu05g0340 Cmetu-Chr5:18898032 Cmetu05g1707 Cmetu-Chr5:19412803 9.80E-147 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g607 Blo01g00099 . . Bda08g00266 . . . . Cmo08g01086 Cmo17g00183 . . . . . . . . . . . . . . Cla06g00628 Cam06g0667 Cec06g0671 Cco06g0676 Clacu06g0654 Cmu06g0647 Cre06g1415 Cone14ag0131 Cone15ag0138 . . . Csa02g01103 Chy05g00362 . . . . . Bpe05g00868 . . . Sed09g0722 . . Cma08g01112 Cma17g00187 Car08g00995 Car17g00166 Cpe12g00161 Cpe17g00172 Bhi12g02261 Tan06g2463 Cmetu05g0340 . Hepe03g0248 . Lcy13g0329 . . . . . . . Lsi09g01276 . . Cme05g00518
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g0910 . 1 447 MRS2 Gene Family AT1G16010 84.8 1.2e-206 716.1
Cmetu03g0526 . 6 380 MRS2 Gene Family AT1G16010 52.4 1.9e-106 383.3
Cmetu05g0340 . 1 366 MRS2 Gene Family AT5G64560 79.1 1.0e-156 550.1
Cmetu05g1707 . 1 370 MRS2 Gene Family AT5G64560 69.3 9.5e-131 463.8
Cmetu01g1912 . 39 495 MRS2 Gene Family AT3G19640 67.0 1.6e-154 543.1
Cmetu06g0043 . 1 372 MRS2 Gene Family AT3G58970 68.9 1.8e-133 473.0
Cmetu03g0526 . 6 380 MRS2 Gene Family AT2G03620 68.7 2.9e-136 482.3
Cmetu04g0910 . 13 447 MRS2 Gene Family AT2G03620 53.3 4.5e-113 405.2
Cmetu05g0340 . 1 328 MRS2 Gene Family AT5G09690 74.6 1.0e-125 446.8
Cmetu05g1707 . 1 332 MRS2 Gene Family AT5G09690 64.8 1.1e-108 390.2
Cmetu04g0910 . 40 383 MRS2 Gene Family AT5G09690 50.3 6.1e-78 288.1
Cmetu05g0340 . 23 288 MRS2 Gene Family AT5G09720 66.9 3.5e-88 322.0
Cmetu05g1707 . 34 292 MRS2 Gene Family AT5G09720 62.0 8.0e-77 284.3
Cmetu04g0910 . 1 447 MRS2 Gene Family AT1G80900 83.2 6.0e-201 697.2
Cmetu03g0526 . 6 380 MRS2 Gene Family AT1G80900 53.7 1.8e-104 376.7
Cmetu12g1324 . 26 197 MRS2 Gene Family AT5G22830 86.6 6.0e-79 292.0
Cmetu12g0244 . 15 286 MRS2 Gene Family AT5G22830 57.3 2.4e-72 270.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002609 1 2 1 0 1 1 3 1 1 2 1 1 3 2 2 3 1 5 3 1 2 2 2 2 2 1 2 3 4 3 58