Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0368 ATGCCGACGACTTACAGGCCTGAGCTTCTCACCGTCGCCGTCGCTGTGGTTGCTGTCGGCGTTGCCACTGCCTACTATTTCTACGTCACCAAGAATCCAAACCCAAAGATGTTTTCGATGTTTTCGATGTCTTTTTTTAATTTGTTGTTTTCTGTTATGATAGGTTGCTTGGACCCTGATAACTTCAAGGAATTTAAACTAGTTAAACGCACACAACTTAGCCATAATGTAGCAAAGTTCAGATTCTCTCTTCCGACTCCAACCTCAATCTTGGGGCTGCCGATTGGGCAGCATATGAGCTGCAGAGGAAAAGATAGCCAAGGTGAAGATGTTGTGAAACCTTACACTCCAACCACTTTGGACACAGATGTTGGCTACTTCGAGTTGATGTATCCACAAGGAAGGATGTCCCACCACTTTCGTGAGATGCGTGAAGGTGATTACTTGGCTGTGAAAGGTCCAAAGGGACGATTCAAGTATGAACCCAATGAAGTAGAGGCCTTTGGAATGCTTGCTGGAGGCACAGGCATAACCCCTATGTTCCAGGTTGCAAGAGCAATACTAGAAAATGCAGTGGATCGCACCAACGTGCATCTTATCTATGCTAATGTTACTTATGAAGACATTCTTCTGAAGGAAGAATTGGATAGTCTTGCGACAACGTTCCCTACCCGTTTTTCTATCTACTATGTGCTCAATCAGCCTCCAGAAGAATGGGATGGTGGTGTTGGCTTTGTAACTGAGGAAATGATACGACTACACTGTCCTGCGCCATCCCCTAATGTCCGGATTTTGAGGTGCGGACCACCCCCGATGAACAAAGTTATGGCTGCTTACCTCAACACTATTGGCTACACTTCCCAAATGCAGTTCCAGTTCTAA 882 45.58 MPTTYRPELLTVAVAVVAVGVATAYYFYVTKNPNPKMFSMFSMSFFNLLFSVMIGCLDPDNFKEFKLVKRTQLSHNVAKFRFSLPTPTSILGLPIGQHMSCRGKDSQGEDVVKPYTPTTLDTDVGYFELMYPQGRMSHHFREMREGDYLAVKGPKGRFKYEPNEVEAFGMLAGGTGITPMFQVARAILENAVDRTNVHLIYANVTYEDILLKEELDSLATTFPTRFSIYYVLNQPPEEWDGGVGFVTEEMIRLHCPAPSPNVRILRCGPPPMNKVMAAYLNTIGYTSQMQFQF 293
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22893056 22895909 - PI0023750.1 Cmetu05g0368 356072

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0368 293 SUPERFAMILY Riboflavin synthase domain-like 56 163 IPR017938 -
Cmetu05g0368 293 Pfam Oxidoreductase NAD-binding domain 170 275 IPR001433 GO:0016491
Cmetu05g0368 293 PANTHER NADH-CYTOCHROME B5 REDUCTASE 54 293 IPR001834 GO:0016491
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 113 120 - -
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 207 218 - -
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 91 102 - -
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 146 160 - -
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 169 188 - -
Cmetu05g0368 293 PRINTS Cytochrome B5 reductase signature 263 271 - -
Cmetu05g0368 293 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 207 218 IPR001709 GO:0016491
Cmetu05g0368 293 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 263 271 IPR001709 GO:0016491
Cmetu05g0368 293 PRINTS Flavoprotein pyridine nucleotide cytochrome reductase signature 169 188 IPR001709 GO:0016491
Cmetu05g0368 293 FunFam NADH-cytochrome b5 reductase 55 151 - -
Cmetu05g0368 293 CDD cyt_b5_reduct_like 65 293 - -
Cmetu05g0368 293 FunFam NADH-cytochrome b5 reductase 151 293 - -
Cmetu05g0368 293 Gene3D - 151 293 IPR039261 -
Cmetu05g0368 293 SUPERFAMILY Ferredoxin reductase-like, C-terminal NADP-linked domain 149 287 IPR039261 -
Cmetu05g0368 293 Gene3D Translation factors 55 150 - -
Cmetu05g0368 293 ProSiteProfiles Ferredoxin reductase-type FAD binding domain profile. 60 161 IPR017927 GO:0016491
Cmetu05g0368 293 Pfam Oxidoreductase FAD-binding domain 65 160 IPR008333 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0368 K00326 - - csv:101219272 513.072
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0368 Cmetu-Chr5:22893056 Cmetu08g0889 Cmetu-Chr8:7220773 1.10E-110 dispersed
Cmetu05g0368 Cmetu-Chr5:22893056 Cmetu07g0308 Cmetu-Chr7:19365419 3.40E-43 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g897 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sed05g1022 . . . . . . Cpe16g00938 . Bhi10g00465 Tan07g0597 Cmetu05g0368 . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G53560 78.4 1.3e-58 222.6
Cmetu06g2442 . 1 133 NADPH P450 reductases AT5G53560 68.4 1.6e-51 199.1
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G53560 58.4 6.8e-47 183.7
Cmetu04g1222 . 4 131 NADPH P450 reductases AT5G53560 65.6 3.4e-46 181.4
Cmetu06g2442 . 1 132 NADPH P450 reductases AT5G48810 64.9 8.3e-48 186.8
Cmetu04g1222 . 2 132 NADPH P450 reductases AT5G48810 62.4 3.0e-45 178.3
Cmetu09g1196 . 1 134 NADPH P450 reductases AT5G48810 59.6 1.1e-44 176.4
Cmetu05g1957 . 1 154 NADPH P450 reductases AT5G48810 55.1 1.1e-44 176.4
Cmetu06g2442 . 22 133 NADPH P450 reductases AT2G32720 84.8 7.7e-51 196.8
Cmetu05g1957 . 43 153 NADPH P450 reductases AT2G32720 82.0 3.6e-48 188.0
Cmetu04g1222 . 21 132 NADPH P450 reductases AT2G32720 70.5 5.5e-41 164.1
Cmetu09g1196 . 22 133 NADPH P450 reductases AT2G32720 66.1 8.0e-40 160.2
Cmetu03g1967 . 1 130 NADPH P450 reductases AT1G26340 54.5 7.6e-38 153.7
Cmetu08g0889 . 2 281 NADPH P450 reductases AT5G17770 82.1 2.9e-132 468.4
Cmetu04g1430 . 2 280 NADPH P450 reductases AT5G17770 77.1 9.0e-126 446.8
Cmetu05g0368 . 56 293 NADPH P450 reductases AT5G17770 77.6 2.8e-111 398.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000880 3 3 2 3 3 2 4 3 2 3 3 3 4 3 3 4 3 4 4 2 3 2 2 3 2 1 1 3 5 3 86