Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0445 ATGGAATCGGAGGATGAGCTCGACATGCACGATGCCCATGACGACGACGACGACTCTGTTGACAATGAGGAGGACTTCTACAGTGGCGGCGACGACGATGCTGCTGGCATTGATAGTGACGATGCTGATGTCGGTGATTATGAGTTTGTTGATAATGATTCCGACGATTCTGACGACATGGTCTCCTATCGCCACCAGCAAAACTATATAATCTTGGGCGAGGCAGATATACAACAACGACAGGAGGAAGACATCACGAGAGTATCCACTGTTCTTTCTATTTCAAAAGTAGCCGCTAGCATCCTGCTCCGATATTACAACTGGAGTGTCAGTAAAGTGCATGATGAATGGTTTGCAGATGAAGAAAAGGTTCGTAGATCTGTTGGCTTACTACAAAAGCCAGTTTTGCGACATTCAAATGAACTAGAACTACCTTGTGGTATATGTTTTGAAATCTATCCACGTGATAAGATCCAGTCAGCTGCTTGTGGCCATCCATTTTGCAATGCTTGCTGGACAGGTTACATTAGCACATCGATCAATGATGGTCCAGGATGTCTAATGTTGCGATGTCCAGATCCATCTTGTGGTGCTGCTGTCGGTCAAGATATGATAAATTTATTAGTTTCTGATGATGACAAAAAGAAGTACTTTCGTTATTTTGTTCGATCCTATGTTGAAGACAATAGGAAGACCAAATGGTGCCCCGCTCCAGGATGTGATTATGCTGTAGATTTTATAGTTGGAAGTGGAAGCTATGATGTTACTTGCAGATGCTCCTATAGCTTTTGCTGGAATTGTACTGAGGAAGCTCATCGTCCTGTTGATTGTGTCACTGTAGCTAGATGGATATTGAAGAATAGTGCTGAGTCGGAAAATATGAACTGGATATTGGCAAATTCCAAACCTTGTCCGAAATGTAAACGACCAATTGAGAAAAATCAAGGATGCATGCATATTACTTGCACACCACCTTGTAAATTTGAGTTCTGCTGGCTTTGCCTTGGTCCATGGTCTGATCATGGAGAGAGGACAGGAGGATTCTATGCATGTAATCGCTATGAAACTGCAAAGCAAGAGGGAGTGTATGATGATGCAGAGAAGCGCAGAGAGATGGCAAAGAATTCTCTGGAGAGGTATACACATTATTATGAAAGATGGGCTACCAACCAATCGTCCAGGCAAAAGGCACTTGCAGATCTCCATCAAATGCAGACCGTGCATCTGGAAAAGTTAAGTGACATTCAGTGCCAACCTCAGTCACAGCTAAAATTCATAAGCGAAGCATGGCTACAGATTGTTGAGTGTAGGCGTGTTCTTAAATGGACTTATGCCTATGGATATTATCTACCTGAGCGTGAACATGCCAAGAGACAATTCTTTGAATACTTGCAAGGTGAGGCTGAGTCTGGGTTGGAACGACTCCACCAATGTGCAGAAAAGGAGTTGCATACTTACCTAAATGCTGCTGATGGCCCTTCAAAAGATTTTAATGAGTTCCGTACCAAACTTGCTGGACTAACCAGTGTAACTCGAAATTACTTCGAGAATTTAGTACGTGCGCTTGAGAACGGTCTGTCAGATGTTGATTCCCATGGTACCTGCAGCAAAACAGCAAGCTCAAAGAGTACTGGTGCCTGTAGGAGTAAAGGTGGAAAAGGCAAGATGAGTGCATTCAGAGGTAGCAGTTCGAGTCGAAACATTGATGATACTGACCATTGGTCTTGTGAACATTGCACCTTCGCAAATGTTAAGTCAGCTACATTCTGCCAGATGTGCCAACAACGGCGATAA 1794 43.48 MESEDELDMHDAHDDDDDSVDNEEDFYSGGDDDAAGIDSDDADVGDYEFVDNDSDDSDDMVSYRHQQNYIILGEADIQQRQEEDITRVSTVLSISKVAASILLRYYNWSVSKVHDEWFADEEKVRRSVGLLQKPVLRHSNELELPCGICFEIYPRDKIQSAACGHPFCNACWTGYISTSINDGPGCLMLRCPDPSCGAAVGQDMINLLVSDDDKKKYFRYFVRSYVEDNRKTKWCPAPGCDYAVDFIVGSGSYDVTCRCSYSFCWNCTEEAHRPVDCVTVARWILKNSAESENMNWILANSKPCPKCKRPIEKNQGCMHITCTPPCKFEFCWLCLGPWSDHGERTGGFYACNRYETAKQEGVYDDAEKRREMAKNSLERYTHYYERWATNQSSRQKALADLHQMQTVHLEKLSDIQCQPQSQLKFISEAWLQIVECRRVLKWTYAYGYYLPEREHAKRQFFEYLQGEAESGLERLHQCAEKELHTYLNAADGPSKDFNEFRTKLAGLTSVTRNYFENLVRALENGLSDVDSHGTCSKTASSKSTGACRSKGGKGKMSAFRGSSSSRNIDDTDHWSCEHCTFANVKSATFCQMCQQRR 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 13383394 13438781 + PI0021512.1 Cmetu05g0445 356149

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0445 597 CDD BRcat_RBR_ANKIB1 222 286 - -
Cmetu05g0445 597 FunFam RBR-type E3 ubiquitin transferase 140 229 - -
Cmetu05g0445 597 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 227 IPR013083 -
Cmetu05g0445 597 ProSiteProfiles Zinc finger RING-type profile. 146 190 IPR001841 -
Cmetu05g0445 597 ProSiteProfiles TRIAD supradomain profile. 142 355 IPR044066 -
Cmetu05g0445 597 CDD Rcat_RBR_ARI7-like 300 354 - -
Cmetu05g0445 597 Pfam Ariadne domain 364 549 IPR045840 -
Cmetu05g0445 597 ProSiteProfiles Zinc finger RanBP2 type profile. 570 597 IPR001876 -
Cmetu05g0445 597 Pfam IBR domain, a half RING-finger domain 294 342 IPR002867 GO:0008270
Cmetu05g0445 597 Pfam IBR domain, a half RING-finger domain 215 277 IPR002867 GO:0008270
Cmetu05g0445 597 MobiDBLite consensus disorder prediction 1 58 - -
Cmetu05g0445 597 SUPERFAMILY RING/U-box 216 284 - -
Cmetu05g0445 597 SUPERFAMILY RING/U-box 143 224 - -
Cmetu05g0445 597 SUPERFAMILY RING/U-box 296 344 - -
Cmetu05g0445 597 CDD RING-HC_ARI6-like 143 204 - -
Cmetu05g0445 597 SMART ibrneu5 281 351 IPR002867 GO:0008270
Cmetu05g0445 597 SMART ibrneu5 215 277 IPR002867 GO:0008270
Cmetu05g0445 597 MobiDBLite consensus disorder prediction 536 567 - -
Cmetu05g0445 597 FunFam RBR-type E3 ubiquitin transferase 278 529 - -
Cmetu05g0445 597 PANTHER RBR FAMILY RING FINGER AND IBR DOMAIN-CONTAINING 76 443 IPR031127 GO:0004842|GO:0016567
Cmetu05g0445 597 MobiDBLite consensus disorder prediction 1 56 - -
Cmetu05g0445 597 Gene3D - 562 597 - -
Cmetu05g0445 597 ProSitePatterns Zinc finger RanBP2-type signature. 574 593 IPR001876 -
Cmetu05g0445 597 SMART zf_4 572 596 IPR001876 -
Cmetu05g0445 597 SUPERFAMILY Ran binding protein zinc finger-like 570 597 IPR036443 -
Cmetu05g0445 597 Gene3D - 273 529 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0445 K11968 - - csv:101218052 1176.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu03g0957 Cmetu-Chr3:19249278 Cmetu05g0445 Cmetu-Chr5:13383394 2.10E-257 dispersed
Cmetu05g0445 Cmetu-Chr5:13383394 Cmetu11g0823 Cmetu-Chr11:27081106 5.60E-53 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu11g0823 . 164 589 ARIADNE family AT4G34370 72.4 8.4e-184 640.2
Cmetu11g0823 . 58 542 ARIADNE family AT2G16090 77.4 1.3e-225 779.2
Cmetu11g0823 . 28 543 ARIADNE family AT3G27710 61.7 4.3e-185 644.8
Cmetu11g0823 . 44 522 ARIADNE family AT3G27720 54.5 7.5e-144 507.7
Cmetu05g0445 . 1 542 ARIADNE family AT1G05890 63.4 3.2e-218 755.0
Cmetu03g0957 . 61 529 ARIADNE family AT1G05890 73.3 1.5e-215 746.1
Cmetu05g0445 . 20 597 ARIADNE family AT1G65430 73.4 9.5e-260 892.9
Cmetu03g0957 . 16 588 ARIADNE family AT1G65430 67.5 8.4e-240 826.6
Cmetu05g0445 . 9 460 ARIADNE family AT2G31780 53.8 2.0e-148 522.7
Cmetu03g0957 . 57 454 ARIADNE family AT2G31780 57.8 1.3e-142 503.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001364 2 4 3 1 2 2 3 3 2 3 2 2 3 2 2 3 2 4 2 3 2 2 3 2 2 2 2 3 3 1 72