Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0487 ATGACAATCGACCATCACTCCCAACACTCCGATCAAACACACAGTTCCGCCAGCAACGATGATGATTCCAACCATCTCCATCCTACTCTTCCCACGCCAGTTGTCGCCAATGGCACGGACTACAATAATGCCGGAGATGACCTCTTCGTTCCTCCCCTGAACTTCGCTGTCGTTGACAACGGCATTTTTCGCTCTGGTTTCCCCGACTCTTCCAACTTCTCTTTCTTGCAGACATTAGGCCTTCGGTCTATTATTTGTCTTTGTCCCGAGCCATATCCTGAGGCTAGCATGGATTTCCTCAACTCCAATGGGATCCGATTGTTTCAATTTGGGATTGAAGGTTCTAAGGCTGGTTCAGACAAGGTTGATGCATATGTAAACTTGATTCTCGAGTGTATGAGGAATTTGGATATGAGCGCTGATCAAATGTACTATTTGGAGCCTTTTGTGAACATTCCAGACTACACGATTCGTGAAGTACTTAAAGTTATTCTTGATGTGAGGAATCGACCAGTTTTAATCCATTGCAAGCGAGGGAAGCACCGAACTGGATGTGTTGTGGGATGCTTTAGAAAGGTGCAGAAATGGTGCTTGTCGTCAGTGTTTGATGAGTATCAGCGGTTTGCCGCTGCCAAGGCAAGAGTTTCAGATCAGAGATTCATTGAACTATTCGACATTTCTGGGTTGAAGCTTTTGCCATCATCATTTTCATGTTCCGAAAGGTAA 726 45.18 MTIDHHSQHSDQTHSSASNDDDSNHLHPTLPTPVVANGTDYNNAGDDLFVPPLNFAVVDNGIFRSGFPDSSNFSFLQTLGLRSIICLCPEPYPEASMDFLNSNGIRLFQFGIEGSKAGSDKVDAYVNLILECMRNLDMSADQMYYLEPFVNIPDYTIREVLKVILDVRNRPVLIHCKRGKHRTGCVVGCFRKVQKWCLSSVFDEYQRFAAAKARVSDQRFIELFDISGLKLLPSSFSCSER 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 20754269 20757206 - PI0001740.1 Cmetu05g0487 356191

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0487 241 MobiDBLite consensus disorder prediction 1 37 - -
Cmetu05g0487 241 MobiDBLite consensus disorder prediction 1 21 - -
Cmetu05g0487 241 ProSitePatterns Tyrosine specific protein phosphatases active site. 174 184 IPR016130 GO:0016311|GO:0016791
Cmetu05g0487 241 PRINTS Plant and fungal dual specificity phosphatase signature 86 99 IPR020428 GO:0016791
Cmetu05g0487 241 PRINTS Plant and fungal dual specificity phosphatase signature 152 166 IPR020428 GO:0016791
Cmetu05g0487 241 PRINTS Plant and fungal dual specificity phosphatase signature 49 66 IPR020428 GO:0016791
Cmetu05g0487 241 PRINTS Plant and fungal dual specificity phosphatase signature 105 119 IPR020428 GO:0016791
Cmetu05g0487 241 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 49 226 IPR029021 -
Cmetu05g0487 241 Pfam Tyrosine phosphatase family 50 227 IPR004861 -
Cmetu05g0487 241 PANTHER TYROSINE-PROTEIN PHOSPHATASE 34 230 - -
Cmetu05g0487 241 Gene3D Protein tyrosine phosphatase superfamily 48 228 IPR029021 -
Cmetu05g0487 241 ProSiteProfiles Dual specificity protein phosphatase domain profile. 54 238 IPR020422 GO:0006470|GO:0008138
Cmetu05g0487 241 CDD PFA-DSP_Siw14 48 225 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0487 K18045 - - csv:101209768 378.637
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0487 Cmetu-Chr5:20754269 Cmetu11g0212 Cmetu-Chr11:10226967 5.60E-76 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi12g443 . . . . Bpe12g00275 Bpe15g00169 Bma03g01308 Bma08g00533 . . Cma02g00065 Cma20g00235 Car02g00052 Car20g00205 Sed05g1894 . . Bhi05g02097 Tan02g0134 Cmetu05g0487 . . . . Cla02g01771 Cam02g1872 Cec02g1896 Cco02g1936 Clacu02g1854 Cmu02g1800 . . Cone10ag1396 Cone8ag1552 . Lsi10g01569 . Chy11g00950 . Blo04g01214 Blo13g00337 . Bda15g00865 Bpe14g00621 . . . Sed01g0708 Cmo02g00063 Cmo20g00254 . . Car11g01620 . Cpe16g00749 . Bhi10g01060 Tan05g0690 Cmetu11g0212 . Hepe08g0587 . . . . . . . . . Lsi11g01669 Csa06g02393 . Cme11g01505
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu01g1484 . 117 377 Protein tyrosine phosphatase (PTP) family AT1G71860 70.2 1.9e-109 392.9
Cmetu02g0933 . 109 926 Protein tyrosine phosphatase (PTP) family AT5G23720 65.9 1.3e-295 1012.7
Cmetu11g1536 . 20 167 Protein tyrosine phosphatase (PTP) family AT3G06110 56.4 1.6e-42 169.5
Cmetu05g0500 . 1 166 Protein tyrosine phosphatase (PTP) family AT2G04550 77.5 2.3e-71 265.4
Cmetu10g0979 . 96 376 Protein tyrosine phosphatase (PTP) family AT3G52180 69.8 1.3e-116 416.4
Cmetu10g1171 . 29 282 Protein tyrosine phosphatase (PTP) family AT3G10940 72.8 1.2e-109 393.3
Cmetu04g0638 . 141 589 Protein tyrosine phosphatase (PTP) family AT3G01510 72.8 2.2e-203 705.3
Cmetu11g0212 . 2 214 Protein tyrosine phosphatase (PTP) family AT2G32960 57.5 1.5e-74 276.6
Cmetu05g0487 . 45 241 Protein tyrosine phosphatase (PTP) family AT2G32960 64.2 1.7e-70 263.1
Cmetu02g1280 . 3 170 Protein tyrosine phosphatase (PTP) family AT2G32960 52.0 5.8e-55 211.5
Cmetu06g0363 . 8 304 Protein tyrosine phosphatase (PTP) family AT2G35680 60.5 1.2e-100 363.6
Cmetu05g1458 . 18 264 Protein tyrosine phosphatase (PTP) family AT2G35680 54.9 1.5e-79 293.5
Cmetu06g0363 . 8 183 Protein tyrosine phosphatase (PTP) family AT5G56610 52.3 1.3e-43 173.3
Cmetu11g0212 . 38 214 Protein tyrosine phosphatase (PTP) family AT4G03960 73.4 3.2e-77 285.0
Cmetu05g0487 . 43 241 Protein tyrosine phosphatase (PTP) family AT4G03960 62.3 3.9e-67 251.5
Cmetu02g1280 . 13 170 Protein tyrosine phosphatase (PTP) family AT4G03960 62.0 2.1e-57 219.2
Cmetu02g1280 . 7 200 Protein tyrosine phosphatase (PTP) family AT3G02800 69.4 1.6e-79 292.7
Cmetu11g0212 . 41 208 Protein tyrosine phosphatase (PTP) family AT3G02800 60.1 2.7e-55 212.2
Cmetu05g0487 . 39 230 Protein tyrosine phosphatase (PTP) family AT3G02800 51.0 4.4e-50 194.9
Cmetu10g0718 . 1 175 Protein tyrosine phosphatase (PTP) family AT3G55270 59.9 1.9e-53 208.0
Cmetu04g1134 . 1 407 Protein tyrosine phosphatase (PTP) family AT5G39400 65.2 1.4e-156 549.7
Cmetu01g2130 . 11 610 Protein tyrosine phosphatase (PTP) family AT3G19420 64.8 3.2e-221 765.0
Cmetu08g1753 . 31 606 Protein tyrosine phosphatase (PTP) family AT3G19420 62.0 5.5e-197 684.5
Cmetu08g1753 . 33 606 Protein tyrosine phosphatase (PTP) family AT3G50110 63.2 4.5e-194 674.9
Cmetu01g2130 . 42 610 Protein tyrosine phosphatase (PTP) family AT3G50110 59.1 6.8e-182 634.4
Cmetu02g1753 . 1 1234 Protein tyrosine phosphatase (PTP) family AT5G58160 54.0 6.5e-301 1030.8
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT3G10550 69.3 0.0e+00 1170.2
Cmetu03g1121 . 1 843 Protein tyrosine phosphatase (PTP) family AT5G04540 66.0 0.0e+00 1106.3
Cmetu11g0267 . 17 244 Protein tyrosine phosphatase (PTP) family AT3G44620 58.0 9.1e-72 267.3
Cmetu06g0725 . 23 320 Protein tyrosine phosphatase (PTP) family AT2G35320 63.4 7.3e-113 404.1
Cmetu08g1543 . 1 642 Protein tyrosine phosphatase (PTP) family AT3G09100 66.9 2.4e-262 901.7
Cmetu08g1543 . 5 642 Protein tyrosine phosphatase (PTP) family AT5G01290 62.4 2.5e-235 812.0
Cmetu08g1543 . 86 642 Protein tyrosine phosphatase (PTP) family AT5G28210 54.3 2.0e-173 606.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001007 2 3 3 4 3 2 4 2 2 2 2 2 4 2 2 4 2 4 4 1 2 2 2 2 2 2 2 7 6 2 83