Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0490 ATGGCGGGTAATGGGGTTTTTGCAGAGATTTTCGACGGTGAAGTCTACAAATACTATTCAGAAGGTGAATGGAAGAAATCCTCCTCAGGGAAGTCCGTTGCCATTATCAACCCCACTACTAGGAAGACCCAGTACAGAGTTCAAGCTTGTAATCAAGAGGAGGTTAATAAAGTGATGGAAATAGCCAAATCTGCTCAGAAGTCATGGGCAAAGACTCCATTGTGGAAGAGAGCAGAGCTTCTTCATAAAGCTGCTGCAATTTTGAAAGAACACAAAGCTCCCATTGCTGAGTGTTTGGTGAAGGAAATTGCTAAACCAGCCAAAGATGCAGTCACTGAGGTTGTGAGGTCTGGGGATCTTGTTTCATATTGTGCTGAAGAAGGTGTGAGGATTTTGGGTGAAGGGAAGTTCTTGGTTTCTGATAGTTTCCCTGGAAATGAGAGGACCAAATATTGTCTTACTTCCAAGATCCCTCTTGGTGTGATTTTAGCCATTCCTCCATTCAACTATCCTGTCAATCTGGCTGTTTCAAAAATTGCCCCGGCTTTAATTGCTGGAAATTCTATTGTACTGAAGCCTCCAACTCAGGGAGCTGTTTCTGCTCTCCACATGGTACATTGCTTCCATTTAGCTGGTTTTCCTAAAGGCCTTATTAGTTGTGTCACGGGAAAAGGTTCCGAGATTGGTGATTTCCTCACAATGCATCCGGGTGTCGACTGTATAAGCTTTACCGGTGGGGATACCGGTATTGCAATTTCAAAGAAGGCAGGCATGATACCTCTTCAGATGGAACTGGGAGGCAAAGACGCCTGCATTGTGCTCGAGGATGCAGATCTTGATTTAGTTGCCGCTAACATCATAAAGGGAGGCTTTTCTTACAGTGGCCAAAGGTGTACTGCCGTCAAGGTTGTTTTGGTAATGGAATCTGTCGCAGATGCTTTAGTCGAGAAAGTAAATGCACGAGTGGCTAAATTAACTGTTGGTGCCCCTGAAGACGACTCAGACATTACTCCAGTTGTGACTGAGTCATCGGCGAATTTCATTGAAGGGCTGGTTATGGATGCAAAGGAAAAGGGTGCAACATTTTGCCAAGAGTACAAAAGAGAGGGAAACCTAATTTGGCCCTTGTTATTAGATAATGTTAGGCCTGATATGAGGATTGCATGGGAGGAACCTTTTGGCCCAGTTTTGCCAGTTATTAGGATCAATTCTATTGAAGAAGGAATCCACCATTGTAATGCTAGCAACTTTGGACTTCAGGGATGTGTCTTCACGAAGGACATCAACAAGGCAATATTGATAAGCGACGCAATGGAAACCGGAACAGTTCAAATCAACTCAGCACCTGCTCGAGGACCCGATCATTTCCCATTTCAGGGAATCAAGGACAGTGGAATTGGTTCTCAAGGTGTTACTAACAGCATCAACATGATGACCAAAGTGAAGACCACAGTTATCAACTTGCCAACACCGTCCTACACCATGGGGACCAAGTCCATTAGTAAGGGAGCCCTAGGGTCCAAATTGTGA 1530 44.51 MAGNGVFAEIFDGEVYKYYSEGEWKKSSSGKSVAIINPTTRKTQYRVQACNQEEVNKVMEIAKSAQKSWAKTPLWKRAELLHKAAAILKEHKAPIAECLVKEIAKPAKDAVTEVVRSGDLVSYCAEEGVRILGEGKFLVSDSFPGNERTKYCLTSKIPLGVILAIPPFNYPVNLAVSKIAPALIAGNSIVLKPPTQGAVSALHMVHCFHLAGFPKGLISCVTGKGSEIGDFLTMHPGVDCISFTGGDTGIAISKKAGMIPLQMELGGKDACIVLEDADLDLVAANIIKGGFSYSGQRCTAVKVVLVMESVADALVEKVNARVAKLTVGAPEDDSDITPVVTESSANFIEGLVMDAKEKGATFCQEYKREGNLIWPLLLDNVRPDMRIAWEEPFGPVLPVIRINSIEEGIHHCNASNFGLQGCVFTKDINKAILISDAMETGTVQINSAPARGPDHFPFQGIKDSGIGSQGVTNSINMMTKVKTTVINLPTPSYTMGTKSISKGALGSKL 509
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 1922440 1927297 + PI0025455.1 Cmetu05g0490 356194

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0490 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 22 281 - -
Cmetu05g0490 509 CDD ALDH_F11_NP-GAPDH 15 487 - -
Cmetu05g0490 509 FunFam NADP-dependent glyceraldehyde-3-phosphate dehydrogenase 267 457 - -
Cmetu05g0490 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 267 457 IPR016163 GO:0016620
Cmetu05g0490 509 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 263 270 IPR029510 GO:0016491
Cmetu05g0490 509 Pfam Aldehyde dehydrogenase family 24 483 IPR015590 GO:0016491
Cmetu05g0490 509 SUPERFAMILY ALDH-like 15 487 IPR016161 GO:0016491
Cmetu05g0490 509 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 291 302 IPR016160 GO:0016491
Cmetu05g0490 509 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 22 483 IPR016162 GO:0016491
Cmetu05g0490 509 PANTHER ALDEHYDE DEHYDROGENASE 2 499 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0490 K00131 - - csv:101208699 964.526
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0490 Cmetu-Chr5:1922440 Cmetu11g1721 Cmetu-Chr11:3775056 6.30E-45 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g1987 . 7 454 Aldehyde Dehydrogenase Gene Family AT3G24503 71.5 5.0e-188 654.4
Cmetu05g1877 . 58 542 Aldehyde Dehydrogenase Gene Family AT3G24503 54.7 6.4e-159 557.8
Cmetu02g1050 . 46 551 Aldehyde Dehydrogenase Gene Family AT3G24503 53.3 4.3e-155 545.0
Cmetu02g1050 . 4 551 Aldehyde Dehydrogenase Gene Family AT3G48000 77.4 6.3e-253 870.2
Cmetu05g1877 . 1 542 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 6.7e-247 850.1
Cmetu02g1987 . 23 454 Aldehyde Dehydrogenase Gene Family AT3G48000 55.3 9.3e-140 494.2
Cmetu05g1877 . 1 386 Aldehyde Dehydrogenase Gene Family AT1G23800 75.8 5.6e-169 590.9
Cmetu02g1050 . 4 395 Aldehyde Dehydrogenase Gene Family AT1G23800 72.7 4.4e-166 581.3
Cmetu02g1987 . 23 351 Aldehyde Dehydrogenase Gene Family AT1G23800 54.1 2.9e-101 365.9
Cmetu07g0284 . 3 486 Aldehyde Dehydrogenase Gene Family AT4G34240 62.8 1.9e-180 629.4
Cmetu07g0245 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.0 1.6e-176 616.3
Cmetu07g0284 . 74 484 Aldehyde Dehydrogenase Gene Family AT1G44170 73.0 1.9e-180 629.0
Cmetu07g0245 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 71.3 5.4e-175 610.9
Cmetu05g0548 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 51.5 5.1e-117 418.3
Cmetu07g0297 . 1 462 Aldehyde Dehydrogenase Gene Family AT4G36250 58.5 3.1e-166 582.0
Cmetu05g0548 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 55.7 4.4e-157 551.6
Cmetu11g2423 . 37 540 Aldehyde Dehydrogenase Gene Family AT1G79440 77.0 4.9e-234 807.4
Cmetu01g1175 . 23 483 Aldehyde Dehydrogenase Gene Family AT2G14170 82.6 6.1e-225 777.3
Cmetu08g0424 . 218 643 Aldehyde Dehydrogenase Gene Family AT2G14170 66.7 2.3e-171 599.4
Cmetu02g0096 . 1 501 Aldehyde Dehydrogenase Gene Family AT1G74920 81.6 1.9e-251 865.1
Cmetu02g0096 . 1 503 Aldehyde Dehydrogenase Gene Family AT3G48170 80.9 3.1e-254 874.4
Cmetu05g0490 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 90.4 1.5e-269 925.2
Cmetu12g1329 . 21 548 Aldehyde Dehydrogenase Gene Family AT5G62530 77.1 2.6e-254 874.8
Cmetu11g1721 . 41 627 Aldehyde Dehydrogenase Gene Family AT3G66658 76.3 1.3e-275 945.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005298 1 2 1 1 1 1 2 1 1 1 1 1 1 1 1 2 1 3 2 1 1 1 1 1 1 1 1 3 2 2 40