Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0533 ATGACACAATCTCTCCAACTTTTCACTTCCTCCGCCATTTCTCTCCCCAAACACTCCATCTCTAAACCCTCCTCTTCCTCCGCCGCTTTCCGCTTTCCTTTCTCCTTCTCCAAATCCTCAATTAGAGCTTCTTCTTCTCCGGATCTCAATCCTCTCTCTTCTTCTTCCACTTCCCAAGTCTTGGTTTCTGAAAATGGCTCCAGTTCCGGTGGTGGGGTTGTGTCCTCTTCTGCTACTAGGGAGTTTGTGTCTGTTGCCTCTGATTCCACCTCGATTGAGGTTGATGCTGTCACTGAAGCTGAGTTGAAGGAGAATGGGTTCAGGAGTACCAGGAGGACTAAGCTCGTGTGCACTATTGGCCCTGCTAGTTGTGGATTCGAACAGCTCGAGGCGCTCGCTGTTGGTGGTATGAATGTCGCTAGGATCAATATGTGCCATGGGACTCGAGACTGGCATCGAACCGTTATTGAACGTGTCCGGAGGCTCAATGATGAGAAGGGTTATGCTGTTGCTATTATGATGGATACCGAAGGGAGTGAAATTCACATGGGTGATCTTGGTGGAGCTTCTTCGGCTAAAGCGGAAGATGGTGAAATTTGGACATTCAGTGTCAGAGCTTTTGATTCAACCCTCCCAGAACGCACCATTAATGTGAACTATGAAGGGTTTGCAGAAGATGTGAGAGTGGGTGATGACCTTCTTGTTGATGGTGGAATGGTGAGGTTTGAGGTAATCGAAAAAATTGGTCCAGATGTTAAATGCCTGTGTACTGACCCGGGATTGTTGTTGCCACGGGCTAATTTGACTTTTTGGAGGGATGGACATCTAGTACGAGAACGTAATGCCATGCTCCCTACAATTTCTTCTAAGGATTGGTTGGATATTGATTTTGGGATTGCTGAAGGTGTTGATTTTCTTGCCATATCATTTGTCAAGTCTGCTGAAGTAATTAAACATCTCAAAAGCTATATCGCTGCACGTTCTCGTGGCAGTGACATTTCCATAATTGCAAAAATAGAGAGTCTGGACTCGTTGAAGAACTTGGAAGAAATTATTGTAGCATCAGATGGAGCTATGGTAGCTAGAGGAGATTTAGGAGCTCAAATACCACTGGAACAGGTGCCATCAGTCCAGCAAAAGGTCGTCCATCTGTGCAGACAATTAAATAAACCAGTTATTGTTGCTTCTCAGCTGCTTGAGTCAATGATCGAGTATCCTACACCCACCAGAGCTGAAGTGGCTGATGTTTCTGAGGCGGTTAGGCAGCGATCAGATGCTCTAATGCTGTCTGGTGAGTCTGCCATGGGCCAGTACCCCGACAAGGCATTGGCTGTTTTGAGAAGTGTCAGTCTAAGAATTGAAAAGTGGTGGAGGGATGAGAAACGCCATGAACCTATGGAACTCCCAGAAGTTGGATCTTCATTCTCAGATAGTATCTTAGAAGAGATCTGCAATTCGGCTGCTAAAATGGCCAATAATTTGGAGGTAGATGCGATTTTCGTCTACACAACGTCAGGCCACATGGCATCTCTTCTGTCCCGTTGCCGACCGGATTGCCCAATCTTTGCTTTTACTTCCACAACATCTGTTAGGAGACGTCTTAACTTGCAATGGGGATTGATACCCTTCCGACTGAGCTTCTCCGACGACATGGAAAACAACCTCAACAAAACATTTTTGCTGCTTAAAGCCAGAAACTTGATCAAATCAGGTGACCTTGTAATTGCTGTCTCAGACATGTTGCAATCTATCCAAGTTATGAATGTTCCATAA 1773 45.57 MTQSLQLFTSSAISLPKHSISKPSSSSAAFRFPFSFSKSSIRASSSPDLNPLSSSSTSQVLVSENGSSSGGGVVSSSATREFVSVASDSTSIEVDAVTEAELKENGFRSTRRTKLVCTIGPASCGFEQLEALAVGGMNVARINMCHGTRDWHRTVIERVRRLNDEKGYAVAIMMDTEGSEIHMGDLGGASSAKAEDGEIWTFSVRAFDSTLPERTINVNYEGFAEDVRVGDDLLVDGGMVRFEVIEKIGPDVKCLCTDPGLLLPRANLTFWRDGHLVRERNAMLPTISSKDWLDIDFGIAEGVDFLAISFVKSAEVIKHLKSYIAARSRGSDISIIAKIESLDSLKNLEEIIVASDGAMVARGDLGAQIPLEQVPSVQQKVVHLCRQLNKPVIVASQLLESMIEYPTPTRAEVADVSEAVRQRSDALMLSGESAMGQYPDKALAVLRSVSLRIEKWWRDEKRHEPMELPEVGSSFSDSILEEICNSAAKMANNLEVDAIFVYTTSGHMASLLSRCRPDCPIFAFTSTTSVRRRLNLQWGLIPFRLSFSDDMENNLNKTFLLLKARNLIKSGDLVIAVSDMLQSIQVMNVP 590
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 19053226 19057944 - PI0008795.1 Cmetu05g0533 356237

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0533 590 NCBIfam pyruvate kinase 111 579 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 SUPERFAMILY PK beta-barrel domain-like 180 271 IPR011037 -
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 303 317 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 335 361 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 387 411 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 412 430 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 431 447 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 168 184 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 PRINTS Pyruvate kinase family signature 362 386 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 FunFam Pyruvate kinase 179 285 - -
Cmetu05g0533 590 Gene3D - 111 453 IPR040442 -
Cmetu05g0533 590 Pfam Pyruvate kinase, alpha/beta domain 481 580 IPR015795 -
Cmetu05g0533 590 Gene3D - 179 285 IPR015806 GO:0004743|GO:0006096
Cmetu05g0533 590 PANTHER PYRUVATE KINASE 90 579 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 SUPERFAMILY PK C-terminal domain-like 442 588 IPR036918 -
Cmetu05g0533 590 Gene3D - 454 580 IPR036918 -
Cmetu05g0533 590 ProSitePatterns Pyruvate kinase active site signature. 333 345 IPR018209 GO:0004743|GO:0006096
Cmetu05g0533 590 MobiDBLite consensus disorder prediction 41 75 - -
Cmetu05g0533 590 Pfam Pyruvate kinase, barrel domain 111 456 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g0533 590 FunFam Pyruvate kinase 454 580 - -
Cmetu05g0533 590 FunFam Pyruvate kinase 286 453 - -
Cmetu05g0533 590 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 96 457 IPR015813 GO:0003824
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0533 K00873 - - csv:101218017 1059.28
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0533 Cmetu-Chr5:19053226 Cmetu07g0067 Cmetu-Chr7:249047 3.20E-133 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g584 Blo01g00106 . . Bda08g00261 . . . Bma05g01085 . . . . . . . . . . . . . . . . Cla06g00619 Cam06g0657 Cec06g0661 Cco06g0667 Clacu06g0644 Cmu06g0638 Cre06g1405 . . . . . Csa02g01116 Chy05g00372 . . . . . Bpe05g00875 . . . Sed09g0729 . . Cma08g01117 Cma17g00198 Car08g01000 Car17g00175 Cpe12g00169 Cpe17g00168 Bhi12g02248 Tan06g2474 Cmetu05g0533 . Hepe03g0236 . Lcy13g0319 . . . . . . . Lsi09g01285 . . Cme05g00500
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006080 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 4 2 1 1 1 1 1 1 1 1 2 1 1 38