Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0543 ATGGATTCGGATCAAGGGAAGCTTTTTATTGGTGGGATTTCATGGGAGACTTCTGAGGATAAGCTAAAGGACTACTTTAGCAACTATGGTGAAGTTATGCATACGGTCGTTATGAGGGATAAGATCACTAGCAGACCTAGAGGGTTTGGCTTTGTTGTCTTTGCAGATCCCTCTGTTCTCGATCGAGTTCTTCAGGATAAGCACACTATCGATGGTAAAACGGTTGAGGCCAAGAGGGCCTTATCACGGGAGGAACAGCAGACCCCTGCCAGAGCAAGCAATTCCAATGGTAGAAACTCTGGCGGTGGTGGTGAAGGATTTAAAGAGTACTTTGAGGCTTATGGCCATGTAACTGATGTAGTAGTCATGTATGATCAAAATACTAGGCGTCCACGAGGATTTGGATTTATTTCTTTTGATACTGAAGAAGCTGTTGACAGAGTTTTGCACAAGACGTTTCACGATTTGAATGGTAAACAAGTAGAAGTTAAGCGCGCCCTTCCCAAAGATGCCAATCCAGGTGCAGGTGGCCGTTCAATGGGTGGTGGTGCTGGTAGTGGTGGTTATCAAGGTTATGGGTCATCTGGTGGTGTCAATTCAAATTCTTATGATAATCGTATGGATTCCAATAGGTACATGCAATCACAGGGCTCTAGTGGAGGTTTCCCGCCTTATGGTTCCTCTGGATACAATAATCCTGCGTATGGGTATGGTTCATCGAATAATGGTATGGGATATGGTGGTTATGGAAATTACAGTGGTTCAAATTCTGGGTATGGTGCCCCTGCAGCAGTAGCCTATGGTAACCCAAATGTTGCCAATGCTGGTTATGGGAGCGGTCCTCAAGGTGGACCTAGAAGTTCATGGTCAGGTCAAGCTCCCTCTGGGTATGGAGCCATGGGCTATGGGAATGCAGCTCCTTGGGGTGGTGCTCCTGGCGGCAATGCTGGGGCTGGCAGTGGAGGACCTGGATCTGCACCCACCGGTCATTCTCCTGGTGGAGCTGCTGCTGGGTATGGCAATCAGGGTTATGGATATGGTGGGTTTGGTAATCAAGGTTATGGTTATGGTGGAGGTGATGGCTCGTATGGTAGTCAATCTGGTTATGGTACAACTGGAGGACGATCTGGTAGTGCATCAAATAGCAATGTTGGAGGTGGTCCAAGTGGGGGAGAATTACAGGGGAATAATGCTTACATGGGTAATGGCTATGGGGATGCTAATGGAAACACTGGTTATGGAAATGCTGCATGGAGATCTGATGGAGGACAAGTAGGTTATACAGGTGGTTATGCCGGTGGACAAGCTCGACAAGCCCAACAACAGAGGGATGCCCGGAGTTGTAAAAGTGGAGTCAAGAGAGTCCACTCATGGCTGAACACAGGCTTCGTAATGAAAGACCGTGTTGGTGATGTGTGTGTTCAGCATTTATGGAACTCGAGGACCTTTAATCGGTTGAAAAATGGATTTACCCCCGGAACTGAATATGTTCTCCTGCAAGGCCTTGCCAGCACTATCAAGTATTCCAAGTCTCTGGCATTGCAAGTCATGAGTTTATAG 1560 47.31 MDSDQGKLFIGGISWETSEDKLKDYFSNYGEVMHTVVMRDKITSRPRGFGFVVFADPSVLDRVLQDKHTIDGKTVEAKRALSREEQQTPARASNSNGRNSGGGGEGFKEYFEAYGHVTDVVVMYDQNTRRPRGFGFISFDTEEAVDRVLHKTFHDLNGKQVEVKRALPKDANPGAGGRSMGGGAGSGGYQGYGSSGGVNSNSYDNRMDSNRYMQSQGSSGGFPPYGSSGYNNPAYGYGSSNNGMGYGGYGNYSGSNSGYGAPAAVAYGNPNVANAGYGSGPQGGPRSSWSGQAPSGYGAMGYGNAAPWGGAPGGNAGAGSGGPGSAPTGHSPGGAAAGYGNQGYGYGGFGNQGYGYGGGDGSYGSQSGYGTTGGRSGSASNSNVGGGPSGGELQGNNAYMGNGYGDANGNTGYGNAAWRSDGGQVGYTGGYAGGQARQAQQQRDARSCKSGVKRVHSWLNTGFVMKDRVGDVCVQHLWNSRTFNRLKNGFTPGTEYVLLQGLASTIKYSKSLALQVMSL 519
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 17847284 17850319 + PI0003972.1 Cmetu05g0543 356247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0543 519 CDD RRM1_hnRNPA_hnRNPD_like 8 78 - -
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 192 224 - -
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 79 104 - -
Cmetu05g0543 519 FunFam Heterogeneous nuclear ribonucleoprotein 1 5 87 - -
Cmetu05g0543 519 Gene3D - 105 207 IPR012677 -
Cmetu05g0543 519 SMART rrm1_1 89 164 IPR000504 GO:0003723
Cmetu05g0543 519 SMART rrm1_1 7 78 IPR000504 GO:0003723
Cmetu05g0543 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 6 82 IPR000504 GO:0003723
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 367 390 - -
Cmetu05g0543 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 107 151 IPR000504 GO:0003723
Cmetu05g0543 519 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 8 75 IPR000504 GO:0003723
Cmetu05g0543 519 SUPERFAMILY RNA-binding domain, RBD 3 105 IPR035979 GO:0003676
Cmetu05g0543 519 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 1 1 442 - -
Cmetu05g0543 519 Gene3D - 4 88 IPR012677 -
Cmetu05g0543 519 SUPERFAMILY RNA-binding domain, RBD 107 197 IPR035979 GO:0003676
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 86 101 - -
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 367 394 - -
Cmetu05g0543 519 MobiDBLite consensus disorder prediction 168 224 - -
Cmetu05g0543 519 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 105 168 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0543 K14411 - - csv:101207768 547.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0543 Cmetu-Chr5:17847284 Cmetu06g1409 Cmetu-Chr6:26885358 2.30E-58 dispersed
Cmetu11g1635 Cmetu-Chr11:19890399 Cmetu05g0543 Cmetu-Chr5:17847284 4.20E-59 wgd
Cmetu04g1847 Cmetu-Chr4:21201718 Cmetu05g0543 Cmetu-Chr5:17847284 6.50E-75 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g762 Blo01g00299 Blo12g00140 Bda03g01091 . Bpe04g00987 . Bma04g01016 Bma05g01250 Cmo08g01037 Cmo17g00147 . . . . . . . . . . . . . . Cla06g00688 Cam06g0739 Cec06g0746 Cco06g0757 Clacu06g0730 Cmu06g0714 Cre06g1489 . . Cone7ag0342 Cone4ag0355 . Csa02g01037 Chy05g00300 . . . . . Bpe05g01104 . . . Sed09g0643 . . Cma08g01068 Cma17g00148 Car08g00943 Car17g00130 Cpe12g00125 Cpe17g00209 Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi09g01204 . . Cme05g00604
Vvi7g608 . . . . . . Bma13g00725 . . . Cma02g01728 Cma19g00109 Car02g01480 . . . Cpe15g00097 . . . . . . . Cla09g00914 Cam09g0966 Cec09g0971 Cco09g0977 . . Cre09g0935 Cone17ag0684 Cone20ag0849 . Cone11ag0805 . . Chy04g01108 . Blo07g01047 Blo10g00630 . . . . . . Sed09g0643 Cmo02g01772 Cmo19g00121 . . . . . . Bhi12g01574 Tan06g2380 Cmetu05g0543 Lac12g2130 Hepe03g0304 . Lcy13g0400 . . . . . . . Lsi05g01044 Csa03g02615 . Cme04g00962
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001187 1 2 4 4 3 1 4 1 3 2 1 2 4 2 2 4 2 6 3 1 2 2 2 2 2 2 2 4 4 2 76