Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0659 ATGGAGCATGGAGGTGTTGTGTCGAAGGGGACGGTGTCAGACCCTTCAAGTTCATACCAAAAAATAATAATAGTTGCAGCTATTGCAGCCGGTGTCCAATTTGGTTGGGCTCTCCAGCTTTCATTGCTAACACCTTACGTACAACAACTTGGAGTTTCACATACATGGTCAGCTTTCATATGGCTTTGCGGACCATTATCGGGGCTTATTGTGCAACCTACTGTCGGGTATTACAGTGATCGTTGCACCTCTAGGTTTGGTCGTCGTCGGCCGTTCATCGTTGCTGGAGCTAGTTGTGTGGCAGCTGCAGTTTTCCTCATTGGCTTTGCTGCAGACATTGGGCATGCAGTGGGTGATCAGCTCTCCAGACCCACAAAACCAAGAGCTGTGGCCATCTTTGTAGTTGGATTTTGGGTTCTTGATGTTGCTAACAACATGCTCCAAGGCCCTTGTAGAGCTCTGTTGGCAGATATGTCATGTAACAACCACAAGAAGATGAGAATGGCCAATGGATTTTTCTCATTCTTCATGGGGGTAGGGAATGTTTTGGGGTACGCAGCTGGGTCCTATAGCAAACTCTATACAATCCTTCCCTTCACACTAACCGATGCATGTGACACTTACTGCGCCAACCTCAAAACATGCTTCTTGTTCGACATTGTATTCCTTCTCCTCATTACCACGTTCGCCGTATTGTCGGTGAGCGAGAAGCCATTTGAGCAATTGGACATTGACGAAGAAGCAACACCCTTTTTCGGAAAATTGTTTGGAGCACTCAAGAAGTTGGAGAAGCCCATGTGGATTTTGTTGCTCGTAACAGCCTTGAACTGGATCGGTTGGTTCCCATTTATCATGTACGATACTGACTGGATGGGTTTAGAAGTGTACGGAGGAAAGCCAAAGGGGAGTCCTCAAGAAGTCAAGTTCTATGACCTTGGTGTTCGTGCTGGTGCCCTTGGGTTGATGATAAATTCGTTTGTTTTAGGATTTTCAGCTTTGGAATTGAGCCAATAA 1014 46.25 MEHGGVVSKGTVSDPSSSYQKIIIVAAIAAGVQFGWALQLSLLTPYVQQLGVSHTWSAFIWLCGPLSGLIVQPTVGYYSDRCTSRFGRRRPFIVAGASCVAAAVFLIGFAADIGHAVGDQLSRPTKPRAVAIFVVGFWVLDVANNMLQGPCRALLADMSCNNHKKMRMANGFFSFFMGVGNVLGYAAGSYSKLYTILPFTLTDACDTYCANLKTCFLFDIVFLLLITTFAVLSVSEKPFEQLDIDEEATPFFGKLFGALKKLEKPMWILLLVTALNWIGWFPFIMYDTDWMGLEVYGGKPKGSPQEVKFYDLGVRAGALGLMINSFVLGFSALELSQ 337
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 11714251 11716188 + PI0017494.1 Cmetu05g0659 356363

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0659 337 Gene3D MFS general substrate transporter like domains 16 334 IPR036259 -
Cmetu05g0659 337 PANTHER SUGAR TRANSPORTER 20 333 - -
Cmetu05g0659 337 Pfam MFS/sugar transport protein 28 279 - -
Cmetu05g0659 337 NCBIfam sucrose/proton symporter 18 335 IPR005989 GO:0005886|GO:0008515|GO:0015770
Cmetu05g0659 337 SUPERFAMILY MFS general substrate transporter 22 291 IPR036259 -
Cmetu05g0659 337 CDD MFS_SLC45_SUC 31 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0659 K15378 - - csv:116401998 630.172
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0659 Cmetu-Chr5:11714251 Cmetu05g0673 Cmetu-Chr5:11682831 1.40E-194 dispersed
Cmetu05g0952 Cmetu-Chr5:11690213 Cmetu05g0659 Cmetu-Chr5:11714251 9.30E-195 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu03g0103 . 28 491 Sucrose Transporter Gene Family AT1G22710 52.8 7.5e-139 491.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G22710 64.9 5.6e-126 448.4
Cmetu05g0673 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu05g0952 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu03g0103 . 21 491 Sucrose Transporter Gene Family AT2G14670 51.8 1.8e-134 476.5
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT2G14670 65.1 1.8e-126 449.9
Cmetu05g0673 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0952 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G66570 64.2 4.2e-125 445.3
Cmetu03g0103 . 21 419 Sucrose Transporter Gene Family AT1G66570 50.6 4.5e-111 398.7
Cmetu09g0159 . 159 611 Sucrose Transporter Gene Family AT2G02860 70.2 1.3e-185 646.4
Cmetu05g0673 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu05g0952 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G06170 50.7 1.4e-129 460.3
Cmetu05g0659 . 8 322 Sucrose Transporter Gene Family AT5G06170 63.9 3.4e-120 429.1
Cmetu05g0673 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu05g0952 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G43610 51.2 3.3e-131 465.7
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT5G43610 65.1 1.3e-124 443.7
Cmetu03g0103 . 14 498 Sucrose Transporter Gene Family AT1G09960 71.0 6.2e-202 700.7
Cmetu05g0673 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0952 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0659 . 8 333 Sucrose Transporter Gene Family AT1G09960 54.8 1.1e-102 370.9
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu03g0103 . 27 502 Sucrose Transporter Gene Family AT1G71880 52.3 4.3e-134 475.3
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G71880 61.7 6.6e-119 424.9
Cmetu05g0673 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0952 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT1G71890 62.0 6.2e-117 418.3
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G71880 60.3 3.1e-169 592.0
Cmetu03g0103 . 27 502 Sucrose Transporter Gene Family AT1G71880 52.3 4.3e-134 475.3
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G71880 61.7 6.6e-119 424.9
Cmetu05g0673 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu05g0952 . 14 495 Sucrose Transporter Gene Family AT1G22710 61.8 6.3e-178 620.9
Cmetu03g0103 . 28 491 Sucrose Transporter Gene Family AT1G22710 52.8 7.5e-139 491.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G22710 64.9 5.6e-126 448.4
Cmetu09g0159 . 159 611 Sucrose Transporter Gene Family AT2G02860 70.2 1.3e-185 646.4
Cmetu03g0103 . 14 498 Sucrose Transporter Gene Family AT1G09960 71.0 6.2e-202 700.7
Cmetu05g0673 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0952 . 8 489 Sucrose Transporter Gene Family AT1G09960 51.0 5.2e-132 468.4
Cmetu05g0659 . 8 333 Sucrose Transporter Gene Family AT1G09960 54.8 1.1e-102 370.9
Cmetu05g0673 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0952 . 17 495 Sucrose Transporter Gene Family AT1G71890 59.5 3.6e-165 578.6
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT1G71890 62.0 6.2e-117 418.3
Cmetu05g0673 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu05g0952 . 17 479 Sucrose Transporter Gene Family AT5G43610 63.0 8.5e-172 600.5
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G43610 51.2 3.3e-131 465.7
Cmetu05g0659 . 17 333 Sucrose Transporter Gene Family AT5G43610 65.1 1.3e-124 443.7
Cmetu05g0673 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0952 . 14 409 Sucrose Transporter Gene Family AT1G66570 61.1 1.6e-145 513.1
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT1G66570 64.2 4.2e-125 445.3
Cmetu03g0103 . 21 419 Sucrose Transporter Gene Family AT1G66570 50.6 4.5e-111 398.7
Cmetu05g0673 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu05g0952 . 14 479 Sucrose Transporter Gene Family AT2G14670 63.2 3.1e-174 608.6
Cmetu03g0103 . 21 491 Sucrose Transporter Gene Family AT2G14670 51.8 1.8e-134 476.5
Cmetu05g0659 . 14 333 Sucrose Transporter Gene Family AT2G14670 65.1 1.8e-126 449.9
Cmetu05g0673 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu05g0952 . 8 479 Sucrose Transporter Gene Family AT5G06170 59.9 1.8e-161 566.2
Cmetu03g0103 . 27 491 Sucrose Transporter Gene Family AT5G06170 50.7 1.4e-129 460.3
Cmetu05g0659 . 8 322 Sucrose Transporter Gene Family AT5G06170 63.9 3.4e-120 429.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002342 4 2 1 7 5 1 2 2 1 1 2 2 3 1 3 2 2 1 1 2 3 2 1 1 2 2 1 1 1 1 60