Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g0766 ATGAAGACCAAGACCCCATTGAAGCAGCTCAAGCTCTCTGTTCCCGTTCAAGAAACTTCCATCCGTTCTTTCCTGACTGCGAGTGGAACATTTCATGATGGCAATCTACTCCTGAATCAGAAAGGATTGCGGCTTATATCTGAAGAGAAAGAATCGCAGACTACAGATTCTAAGGAGCTTGATGTTGATTTCTCGTTGGAAGATCTAGAGACTGTGAAAGTTATTGGGAAAGGAAGTGGAGGTGTAGTACAACTTGTTCGACACAAATGGGTTGGAAAACTTTTTGCCTTAAAGGTAATCCAGATGAACATACAAGAGGATATCCGTAAACAGATAGTACAGGAACTGAAAATAAATCAAGCAGCACAATGTCCACATATTGTCGTCTGCTATCATTCTTTCTACCACAACGGTGCCATTTCTCTTGTGCTAGAATACATGGATCGTGGTTCTTTAGCCGATGTAGTCAGACAAGTCAAAACAATTCTTGAACCATATCTCGCAGTTGTTTGTAAACAGGTTTTACAAGGTCTGGTGTACTTGCATCATGAGCGACATGTAATACACAGAGACATCAAGCCATCCAATCTACTTGTGAACCATAAAGGTGAGGTCAAAATCACTGATTTTGGAGTAAGTGCAATGCTAGCAAGTTCTATGGGTCAGAGAGATACATTTGTAGGGACTTACAATTACATGTCGCCTGAACGAATTAGCGGGGGAACATATGACTACAGCAGTGATATATGGAGTTTGGGTTTGGTAGTACTTGAATGTGCAATTGGAAGGTTTCCTTATTTGCAATCTGAAGAGCAGCAAAGTTGGCCAAGCTTTTATGAACTCCTTGAGGCAATCGTAGCAAAGCCACCGCCTTCAGCTCCACCGGATCAATTCTCCCCTGAGTTCTGTTCTTTCGTTTCTGCTTGCATAAAGAAGGACCCAAAAGAAAGATCATCATCATTAGATCTTCTGAATCATCCTTTCATCAAGAAATTCGAAGATAAAGACATTGACGTCGGGATTCTCGTCGGCAGCTTGGATCCACCGGTAAGTTTTCCCAGACAACAACAATAA 1074 41.71 MKTKTPLKQLKLSVPVQETSIRSFLTASGTFHDGNLLLNQKGLRLISEEKESQTTDSKELDVDFSLEDLETVKVIGKGSGGVVQLVRHKWVGKLFALKVIQMNIQEDIRKQIVQELKINQAAQCPHIVVCYHSFYHNGAISLVLEYMDRGSLADVVRQVKTILEPYLAVVCKQVLQGLVYLHHERHVIHRDIKPSNLLVNHKGEVKITDFGVSAMLASSMGQRDTFVGTYNYMSPERISGGTYDYSSDIWSLGLVVLECAIGRFPYLQSEEQQSWPSFYELLEAIVAKPPPSAPPDQFSPEFCSFVSACIKKDPKERSSSLDLLNHPFIKKFEDKDIDVGILVGSLDPPVSFPRQQQ 357
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 481568 484611 + PI0002830.1 Cmetu05g0766 356470

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g0766 357 Pfam Protein kinase domain 70 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu05g0766 357 Gene3D Phosphorylase Kinase; domain 1 38 148 - -
Cmetu05g0766 357 SMART serkin_6 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu05g0766 357 FunFam Mitogen-activated protein kinase kinase 6 39 148 - -
Cmetu05g0766 357 ProSiteProfiles Protein kinase domain profile. 69 329 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cmetu05g0766 357 SUPERFAMILY Protein kinase-like (PK-like) 67 341 IPR011009 -
Cmetu05g0766 357 FunFam Mitogen-activated protein kinase kinase 6 150 348 - -
Cmetu05g0766 357 PANTHER MITOGEN-ACTIVATED KINASE KINASE KINASE 14 331 - -
Cmetu05g0766 357 ProSitePatterns Protein kinases ATP-binding region signature. 75 98 IPR017441 GO:0005524
Cmetu05g0766 357 ProSitePatterns Serine/Threonine protein kinases active-site signature. 187 199 IPR008271 GO:0004672|GO:0006468
Cmetu05g0766 357 Gene3D Transferase(Phosphotransferase) domain 1 150 344 - -
Cmetu05g0766 357 CDD PKc_MAPKK_plant_like 67 333 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g0766 K04368 - - csv:101218848 696.041
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu04g3241 Cmetu-Chr4:9670669 Cmetu05g0766 Cmetu-Chr5:481568 1.10E-65 dispersed
Cmetu05g0766 Cmetu-Chr5:481568 Cmetu12g1705 Cmetu-Chr12:1674064 4.00E-54 dispersed
Cmetu05g0766 Cmetu-Chr5:481568 Cmetu05g0779 Cmetu-Chr5:192669 6.90E-115 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g0779 . 27 351 MAP Kinase Kinase Gene Family AT4G26070 65.7 9.2e-125 443.7
Cmetu02g0978 . 28 338 MAP Kinase Kinase Gene Family AT4G26070 66.3 3.6e-121 431.8
Cmetu05g0766 . 26 351 MAP Kinase Kinase Gene Family AT4G26070 55.6 2.1e-108 389.4
Cmetu02g0978 . 1 311 MAP Kinase Kinase Gene Family AT4G29810 65.1 5.7e-119 424.5
Cmetu05g0779 . 1 325 MAP Kinase Kinase Gene Family AT4G29810 63.1 1.4e-117 419.9
Cmetu05g0766 . 10 324 MAP Kinase Kinase Gene Family AT4G29810 59.7 1.7e-110 396.4
Cmetu04g3241 . 36 518 MAP Kinase Kinase Gene Family AT5G40440 79.5 5.0e-228 787.3
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT1G51660 71.5 5.1e-129 458.0
Cmetu12g1705 . 5 313 MAP Kinase Kinase Gene Family AT1G51660 50.5 3.8e-84 308.9
Cmetu04g0417 . 1 366 MAP Kinase Kinase Gene Family AT3G21220 67.8 6.9e-128 454.1
Cmetu12g1705 . 41 311 MAP Kinase Kinase Gene Family AT3G21220 54.6 2.1e-84 309.7
Cmetu05g0766 . 1 354 MAP Kinase Kinase Gene Family AT5G56580 84.2 6.1e-172 600.5
Cmetu05g0779 . 1 340 MAP Kinase Kinase Gene Family AT5G56580 55.3 2.4e-107 386.0
Cmetu02g0978 . 7 337 MAP Kinase Kinase Gene Family AT5G56580 53.6 2.1e-103 372.9
Cmetu12g1705 . 1 313 MAP Kinase Kinase Gene Family AT1G18350 64.6 2.4e-108 389.0
Cmetu04g0417 . 77 334 MAP Kinase Kinase Gene Family AT1G18350 52.9 9.3e-76 280.8
Cmetu12g1705 . 1 297 MAP Kinase Kinase Gene Family AT3G06230 52.6 6.3e-82 301.2
Cmetu12g1705 . 1 309 MAP Kinase Kinase Gene Family AT1G73500 67.1 1.1e-113 406.8
Cmetu04g0417 . 78 334 MAP Kinase Kinase Gene Family AT1G73500 52.7 2.9e-77 285.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007196 1 2 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 2 1 2 1 1 37
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
70444 PF00069 Pkinase 2.30E-66 CL0016 Cmetu PK