Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1084 ATGACCATTGAAAATCTTGCTCCAAGGGAAGAGAAGAGGTCAGCCAGGAAGAACTCTGCAGTGGATGAGAAATCTCCTTTGTTACCAAGTAGACAAGATGAGGGTTCTGGGGTTAATGAATTCAGTGGAGCTTCCTTTAGTGGGGCAGTGTTTAATTTATCGACCACAATCATTGGTGCTGGGATCATGGCTTTGCCAGCTATGGTGAAAGAATTGGGCCTCCTTTTAGGGGTTGCCATGATCATCATCATGGCATTCCTTACAGAGGCTTCAATAGAGCTCTTGCTCAGGTTCAGTCGACCGCGGAAATCGACTTCTTATGGAGGATTAATGGGAGATGCTTTTGGGAGATACGGTAAAATTGTGCTGCAGATATGCGTTCTTGTCAACAACATTGGTGTTCTTACTGTGTATATGATTATTATAGGTGATGTGCTCTCTGGAACCACCGCAGACGGTGTTCACCATTCTGGTGTGCTAGAAGGATGGTTTGGCCAACATTGGTGGAATGGTCGATTTTTTGTACTTCTATTTGCGACGCTTGGGATTTTTGCACCATTGGCATGCTTTAAGCGGATAGATTCATTGAGCTTTACATCTGCCTTATCAGTTGCACTGGCTGTGGTATTTCTCGTCATTACCATTGGAATTTCAGTTTACAAGTTGATAGATGGCAGCATTAAGATGCCCAGATTGCTCCCTGAGATTATTGACATTTCATCATTTTTGAAGTTATTTACTGCTGTCCCGGTTGTGGTTACTGCCTATGTATGCCATTACAATGTTCACAGCATAAGCAATGAACTGGAGGATTCTTCACAGATAAAAGCAGTTGTACGAACTGCCATTGGTTTGTGCTCTTCTGTTTATGTTATGACCAGCATCTTCGGCTATCTTCTTTTTGGTGAAGGAACTCTCTCAGACGTACTTGCGAACTTTGATGCTGACCTTGGCATTCCCTATGGTTCTGTGTTTAATGATGCTGTCCGTGTCAGCTATGCAGCACATCTGATGCTTGTATTTCCAATCGTTTTTTACCCGTTGAGAGTTAACTTGGATGGCCTCCTCTTTCCATCTGCTCGACCATTGCTCCGAGACAATTTGAGATTTTCGTTGATCACAGTCACGCTTATTACTCTCCTTTTCTTGGGAGCAAATTTCATTCCGAGCATCTGGGATGTCTTCCAATTTACTGGTGCAACTGCTGCTGTCTGCCTTGGATTCATATTCCCTGCTTCTGTAGCTTTGAGAGATTCACACAATATAGCAACGAAAAAGGACAAGGTGTTGGGTATTTTCATGGTTGTTCTTGCAGTTTTCTCAAACATCATTGCCATATACAGTGATGCGTACGCATTGTTTAAAAGGGACTCCTCGCCCCGAGACTAA 1389 43.27 MTIENLAPREEKRSARKNSAVDEKSPLLPSRQDEGSGVNEFSGASFSGAVFNLSTTIIGAGIMALPAMVKELGLLLGVAMIIIMAFLTEASIELLLRFSRPRKSTSYGGLMGDAFGRYGKIVLQICVLVNNIGVLTVYMIIIGDVLSGTTADGVHHSGVLEGWFGQHWWNGRFFVLLFATLGIFAPLACFKRIDSLSFTSALSVALAVVFLVITIGISVYKLIDGSIKMPRLLPEIIDISSFLKLFTAVPVVVTAYVCHYNVHSISNELEDSSQIKAVVRTAIGLCSSVYVMTSIFGYLLFGEGTLSDVLANFDADLGIPYGSVFNDAVRVSYAAHLMLVFPIVFYPLRVNLDGLLFPSARPLLRDNLRFSLITVTLITLLFLGANFIPSIWDVFQFTGATAAVCLGFIFPASVALRDSHNIATKKDKVLGIFMVVLAVFSNIIAIYSDAYALFKRDSSPRD 462
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15473633 15478321 + PI0023275.3 Cmetu05g1084 356788

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1084 462 MobiDBLite consensus disorder prediction 1 37 - -
Cmetu05g1084 462 MobiDBLite consensus disorder prediction 1 20 - -
Cmetu05g1084 462 PANTHER AMINO ACID TRANSPORTER 40 441 - -
Cmetu05g1084 462 Pfam Transmembrane amino acid transporter protein 44 448 IPR013057 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1084 K14207 - - csv:101207698 842.417
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1513 Cmetu-Chr1:26967412 Cmetu05g1084 Cmetu-Chr5:15473633 1.50E-80 transposed
Cmetu07g0581 Cmetu-Chr7:23121286 Cmetu05g1084 Cmetu-Chr5:15473633 7.30E-146 transposed
Cmetu10g0066 Cmetu-Chr10:13514733 Cmetu05g1084 Cmetu-Chr5:15473633 1.80E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g604 . Blo12g01000 . Bda03g00158 . Bpe04g00140 . . . . . Cma09g00312 . . . Cpe06g00221 . . . . . . . . . . . . . . . . . Cone17ag0904 Cone20ag0247 Lsi04g01453 Csa04g02507 . . . . . . . . . . Sed06g0897 . Cmo09g00312 . . . Car09g00264 . . Bhi09g03189 Tan01g4658 Cmetu05g1084 . Hepe01g1853 Mch11g0388 . . . . . . . . . . Chy07g00214 .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu04g2058 . 34 426 Amino Acid/Auxin Permease AAAP Family AT2G41190 64.4 4.4e-139 491.9
Cmetu04g0855 . 80 449 Amino Acid/Auxin Permease AAAP Family AT2G41190 50.5 2.8e-93 339.7
Cmetu05g1084 . 16 462 Amino Acid/Auxin Permease AAAP Family AT3G30390 69.3 2.2e-174 609.0
Cmetu07g0581 . 18 447 Amino Acid/Auxin Permease AAAP Family AT3G30390 60.2 1.5e-146 516.5
Cmetu04g3081 . 70 393 Amino Acid/Auxin Permease AAAP Family AT3G28960 58.5 1.3e-101 367.1
Cmetu05g1084 . 17 456 Amino Acid/Auxin Permease AAAP Family AT5G38820 67.0 6.4e-166 580.9
Cmetu07g0581 . 35 453 Amino Acid/Auxin Permease AAAP Family AT5G38820 59.1 3.2e-141 498.8
Cmetu01g1513 . 5 492 Amino Acid/Auxin Permease AAAP Family AT1G80510 67.0 7.4e-168 587.4
Cmetu03g1499 . 1 487 Amino Acid/Auxin Permease AAAP Family AT2G39130 67.8 2.2e-180 629.0
Cmetu10g0090 . 44 489 Amino Acid/Auxin Permease AAAP Family AT2G39130 67.5 4.4e-168 588.2
Cmetu04g3081 . 62 393 Amino Acid/Auxin Permease AAAP Family AT5G15240 59.2 9.4e-106 380.6
Cmetu10g0066 . 10 426 Amino Acid/Auxin Permease AAAP Family AT3G56200 60.6 1.9e-135 479.6
Cmetu03g1499 . 1 501 Amino Acid/Auxin Permease AAAP Family AT3G54830 62.0 4.1e-167 585.1
Cmetu10g0090 . 49 503 Amino Acid/Auxin Permease AAAP Family AT3G54830 63.1 3.5e-158 555.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006417 3 1 2 2 2 1 1 0 1 1 1 1 1 1 1 1 1 5 1 1 1 1 1 1 2 1 1 1 0 1 38