Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1099 ATGGCCGCTGATTCTTCCTTTGATGGTGCTATTTTCGACTCGCAAAAATGTAGTAGTAAGTTGACTATGCAAGAGAAGAGAGAACGTGTACATGAAATTTCAAAGTCAAATGGTGCAAGTGAGACACTGCAGTCATGGAGCCGTCAAGATATTCTACAGGTCCTGTGTGCAGAGATGGGGAAGGAAAGAAAATATACAGGCTTGACGAAGCAGAAAATAATTGAGCATCTTTTGAGACTCGTATCCGAAAAGAAGTCATCCGTGTCTGAGGTTTTGAAAAATGTTGAGCCACAGTCTCCTTCAGGTGGTCATAAAACTACCAAAAGGCAGAGGAAATCTGAGCATGTAACTCAACTTTCTGTTCCTGCAACTGACTTTCCAACCAGCAGTTCTCATAATGATTTGGTTCATACGGCTTGCTGCAAAAACTTGGCTTGTCGAGCGACTCTAAATCCAGGAGATGCATTTTGTAGAAGGTGTTCATGCTGCATCTGTCGTCAGTATGATGATAACAAGGATCCTAGCTTGTGGATAAGTTGCAGTGCAGAGCCTCCATTTCAAGGTGACTCATGCAACATGTCATGTCATCTTGAATGTGCTTTGAAAGATGAAAGATCGGGAATTTCGAAAGCTGGACGAAGCAAGGGAATTGATGGGAGCTTCTACTGTGTGTCTTGTGGGAAATTAAATGATTTGCTTGGGTGCTGTAGAAAACAACTTGTTCATGCAAAAGATACAAGAAGGGTCGACATACTGTGCTATCGTGTCTCTCTGAGCCAAAAGCTTCTCCATGGAACTGAAAAGTATAAAGTGCTTTATCAGATTGTTGATGAGTCTGTGAGGAAGCTTGAAGAGGAAGTGGGACCAATAGCCGGTGTACCAGTAAAGATGGGTAGAGGTATCGTAAACAGGCTTTCGTCCGGCCCTGAAGTTCAAAAACTCTGTGCTTCTGCTATTGAGTTATTGGACTCGATGGTCTCCAGCCAATCCTTGCATCTTTCACCTAATCCTGACGTTCAAGATGCAAATTTTGTTCCTGCAAACATGGTTAGATTTGAAGATGTTCAGTCAACATCCCTCACTTTAGTTTTGAGTTATGAAAATGGATCCTCTGAGAACCAGATCGGGTTCACCTTATGGCATCGTAAGGCCGATGATGCAGATTACCCGGCAGAACCAACATGTATTCTACGACAACCGAAGGCGAGGTGTGTTGTGATGGGACTATCACCTGCTACTAAATATCATTTCAAAATTGTTCAGTTTGAGGGGACAAGGGAGTTGAGGGAATTTGAAGTTCAGTTCTCAACAATTGGGGAGGTAGAAGAGAACCCAGGTTGTTTAGAAATTGAGAGAAGCCAAAGTCACGCAACCAACTGCAGTGACCTTTCTAATCCTTCTTCAGTTGAAGACGAAACTACTGACATTCTTCCCTATGGTGATCAGACCAATAACCTAGGAAAAAACTCCCCTGCCTATTCAAAGGGCATCGAAATACTTTCCTCGCCTATATTATCCACTGATGCTTTTAACCTCAGTGACAATGGTGAAGAAGGAACACCTGCAGGAACAGTTTCTGTTCTGAATGAGGCAACTGCTGCAGGAATGGTTGGTTTGATTCCCAACTCTGCTGGATCCAAGCTTGAGAACAGGCATGGACCAGCTGCCCCAAAACTCAACACCGATAATCAGTTAAGCACCCTTGTTCGGTCTGGAATGGAGCGCCAGCCATTTGTTGGCTGTTCTGAAGATGGTTTGCCTATTACTCCCTGCAAGCTTGAAGTGCTAAAGGATAGTCTTGGTAGGGGTGAGAGACCGAAATCTAGCTGCAAGGAACACGAAAATAGGACTCGAAAAGGAGGGGAACCCCAAGATGGTGGCACGTCAAAGATGCGAACTGGTGATAGACAGGATGACAAATGTGCTGAAAACGGTGTTTCAGATCGGGATTTTGAGCAGTATGTGAAGGTAATTAGATGGTTGGAGTGCAAGGGTTATATTGAAAAAAATTTCAGGCAGAAATTTCTCACTTGGTACAGCTTGAGAGCATCTCAACAAGAAGTTAAGATTTTGAAGGTGTTTGTTGATACCTTTATTGAAGATCCAGCATCTCTTGCAGAACAACTTGTAGATACATTTTCAGAATGCATTTCAAGCAAAAAACCGACGATTACACCGCCCGGGTTCTGCATGAAGCTGTGGCACTGA 2208 43.48 MAADSSFDGAIFDSQKCSSKLTMQEKRERVHEISKSNGASETLQSWSRQDILQVLCAEMGKERKYTGLTKQKIIEHLLRLVSEKKSSVSEVLKNVEPQSPSGGHKTTKRQRKSEHVTQLSVPATDFPTSSSHNDLVHTACCKNLACRATLNPGDAFCRRCSCCICRQYDDNKDPSLWISCSAEPPFQGDSCNMSCHLECALKDERSGISKAGRSKGIDGSFYCVSCGKLNDLLGCCRKQLVHAKDTRRVDILCYRVSLSQKLLHGTEKYKVLYQIVDESVRKLEEEVGPIAGVPVKMGRGIVNRLSSGPEVQKLCASAIELLDSMVSSQSLHLSPNPDVQDANFVPANMVRFEDVQSTSLTLVLSYENGSSENQIGFTLWHRKADDADYPAEPTCILRQPKARCVVMGLSPATKYHFKIVQFEGTRELREFEVQFSTIGEVEENPGCLEIERSQSHATNCSDLSNPSSVEDETTDILPYGDQTNNLGKNSPAYSKGIEILSSPILSTDAFNLSDNGEEGTPAGTVSVLNEATAAGMVGLIPNSAGSKLENRHGPAAPKLNTDNQLSTLVRSGMERQPFVGCSEDGLPITPCKLEVLKDSLGRGERPKSSCKEHENRTRKGGEPQDGGTSKMRTGDRQDDKCAENGVSDRDFEQYVKVIRWLECKGYIEKNFRQKFLTWYSLRASQQEVKILKVFVDTFIEDPASLAEQLVDTFSECISSKKPTITPPGFCMKLWH 735
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 5501511 5505868 + PI0004539.1 Cmetu05g1099 356803

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1099 735 PANTHER VIN3-LIKE PROTEIN 2-RELATED 10 735 IPR044514 GO:0010048|GO:0040029
Cmetu05g1099 735 Pfam PHD - plant homeodomain finger protein 141 260 IPR032881 -
Cmetu05g1099 735 MobiDBLite consensus disorder prediction 91 124 - -
Cmetu05g1099 735 MobiDBLite consensus disorder prediction 600 643 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1099 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0023 Cmetu-Chr2:17144353 Cmetu05g1099 Cmetu-Chr5:5501511 6.10E-87 dispersed
Cmetu05g0528 Cmetu-Chr5:918026 Cmetu05g1099 Cmetu-Chr5:5501511 2.60E-83 dispersed
Cmetu03g1987 Cmetu-Chr3:2915730 Cmetu05g1099 Cmetu-Chr5:5501511 1.10E-107 transposed
Cmetu02g1892 Cmetu-Chr2:21659773 Cmetu05g1099 Cmetu-Chr5:5501511 1.10E-169 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1099 . 4 491 PHD Gene Family AT4G30200 51.5 6.2e-127 451.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002200 1 4 1 1 1 2 3 2 2 2 2 2 2 2 2 3 2 2 3 2 2 2 2 2 2 2 2 4 4 1 64