Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1114 ATGATAGAAGAGGAAAGAACAGAGGCAGGCTGGGGTAGTAGGAAGGAGTTGACCATGGCATCGACTTCTTTTGCTGGCGGGAAGCAACTGCCAGTGATTGAAGTGGCTTCTAACTGTGTTCCATACCCACCACCGCAAACAACATATGAAGATATCATAGCCAATTCAAAGATCTTTATGACAGCCTTGGAAAAGCTCCACTCCCTCATGGGAACTAAGTTCATGATCCCCATTATTGGTGGGAAAGAACTAGACCTGCATCGGCTTTTTGTGGAGGTTACTTCTCGTGGTGGAATCGAGAAGGTTATAAGAGAGAGAAGATGGAAAGAAGTAACTTCAGTTTTTAATTTTCCTTCGACGGCCACCAATGCTTCTTTTGTGTTGAGGAAGTACTATATTTCATTGCTTCATCATTTCGAACAGATTTACTTCTTTAAAGCCGTAGGATGGACACCAGTAACTTCCGATTCCTCTCCATGCCCAAGTGCGTCGGCAATTCCTATGCAAGGGGTGACTTCTATGTTGCCGCCATCAGATAATCAGGCAGCATCCCACCAGCCACGGAGCACAGCGACTGAACTTCCAGCAGTTTCTCCGAGTTCAACATCACCGGTAGGAGGGTTTCCAGTGATCGGAGTAATTGACGGAAAATTTGATAGCGGATATCTTGTTACCGTTACTGTAGGAACGGAGAAGCTAAAAGGTGTGCTTTATCAGGCTCCTGAGCAACATTCTCAGCCACAAGTGTTGCAGCCTGTTGGTGCTTTTGCCAAAGATGGTGCCACCCCCACCACACCAAATGCTCATCGCCGCCGTCGTCGGAAGAAATCTGAGATAAAGCGAAGGGATCCCGCTCATCCAAAGCCAAACAGAAGTGGTTACAACTTCTTCTTTGCTGAGCAGCATGCCAGACTCAAACCGTTATACCCAGGGAAGGACAGGGAGATAAGCAGAATGATTGGGGACCTTTGGAATAAACTAAAAGAATCTGAAAGAACAGTTTATCAGGAGAAAGCTATGAAAGATAAAGAAAGATACAGAATCGAGATGGTGGATTACAGAGAGAAGCTGAGGACAGGCCAAATCATCAGTGATGCAGTTCCCTTACAGCAGCGTCTTCCCGAGCCAGACCTGAATATGGTCTATGGTGACAAAAACGAAGAAACTGAGGGCGGTGAGTCTCAAACACCAGATAATGATGCAAGCTATGTGGAAGGCGACTCTGGAGAGTATAAAACAGAAGAGAAGGAGGAAGATGAGGAGGAAGATGAGGAGGACGACGAAGAGGATGAGGAGGACGACTCAGAAGAAGATGCATCTCCACAACGAATTGGTAATGTGGACGTCAACATTTTGGTTGAGGAAGAACAGTGCGAGACGAGAACAGGCGTAGAGAATGTTAGTAAAGAGAGTAGCACGGTTGATGACAAGAAAGAAGTTTTAGCTGGGGATTCGGTAATGGGGGAGGTGGAGGCAAAGGAAGAACCAGAACCAACAACAGCAGCCATTAGAGAAGATTAA 1521 46.22 MIEEERTEAGWGSRKELTMASTSFAGGKQLPVIEVASNCVPYPPPQTTYEDIIANSKIFMTALEKLHSLMGTKFMIPIIGGKELDLHRLFVEVTSRGGIEKVIRERRWKEVTSVFNFPSTATNASFVLRKYYISLLHHFEQIYFFKAVGWTPVTSDSSPCPSASAIPMQGVTSMLPPSDNQAASHQPRSTATELPAVSPSSTSPVGGFPVIGVIDGKFDSGYLVTVTVGTEKLKGVLYQAPEQHSQPQVLQPVGAFAKDGATPTTPNAHRRRRRKKSEIKRRDPAHPKPNRSGYNFFFAEQHARLKPLYPGKDREISRMIGDLWNKLKESERTVYQEKAMKDKERYRIEMVDYREKLRTGQIISDAVPLQQRLPEPDLNMVYGDKNEETEGGESQTPDNDASYVEGDSGEYKTEEKEEDEEEDEEDDEEDEEDDSEEDASPQRIGNVDVNILVEEEQCETRTGVENVSKESSTVDDKKEVLAGDSVMGEVEAKEEPEPTTAAIRED 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 16472968 16475892 - PI0024339.1 Cmetu05g1114 356818

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1114 506 FunFam High mobility group B protein 15 47 159 - -
Cmetu05g1114 506 SUPERFAMILY ARID-like 50 156 IPR036431 GO:0003677
Cmetu05g1114 506 CDD ARID_HMGB9-like 55 140 IPR045303 GO:0003677
Cmetu05g1114 506 SMART ARID_2 50 140 - -
Cmetu05g1114 506 MobiDBLite consensus disorder prediction 412 438 - -
Cmetu05g1114 506 FunFam High mobility group B protein 15 269 364 - -
Cmetu05g1114 506 Gene3D - 46 147 IPR036431 GO:0003677
Cmetu05g1114 506 PANTHER HIGH MOBILITY GROUP B PROTEIN 9 35 403 - -
Cmetu05g1114 506 SMART bright_3 54 145 IPR001606 GO:0003677
Cmetu05g1114 506 SUPERFAMILY HMG-box 280 359 IPR036910 -
Cmetu05g1114 506 CDD HMG-box_AtHMGB9-like 287 353 - -
Cmetu05g1114 506 MobiDBLite consensus disorder prediction 256 294 - -
Cmetu05g1114 506 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 287 354 IPR009071 -
Cmetu05g1114 506 MobiDBLite consensus disorder prediction 173 200 - -
Cmetu05g1114 506 Coils Coil 336 356 - -
Cmetu05g1114 506 MobiDBLite consensus disorder prediction 368 477 - -
Cmetu05g1114 506 ProSiteProfiles ARID domain profile. 53 144 IPR001606 GO:0003677
Cmetu05g1114 506 SMART hmgende2 286 355 IPR009071 -
Cmetu05g1114 506 Coils Coil 411 438 - -
Cmetu05g1114 506 Pfam ARID/BRIGHT DNA binding domain 57 140 IPR001606 GO:0003677
Cmetu05g1114 506 Gene3D High mobility group box domain 271 366 IPR036910 -
Cmetu05g1114 506 Pfam HMG (high mobility group) box 287 354 IPR009071 -
Cmetu05g1114 506 MobiDBLite consensus disorder prediction 267 281 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1114 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1114 Cmetu-Chr5:16472968 Cmetu07g1207 Cmetu-Chr7:24270327 2.90E-74 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1114 . 19 384 ARID Transcription Factor Family AT1G04880 55.9 1.1e-104 377.5
Cmetu06g1465 . 208 477 ARID Transcription Factor Family AT1G20910 61.0 2.5e-89 326.2
Cmetu07g1207 . 16 310 ARID Transcription Factor Family AT1G76110 68.5 2.1e-113 406.0
Cmetu06g1465 . 187 507 ARID Transcription Factor Family AT1G76510 59.5 7.6e-108 387.9
Cmetu04g1213 . 1 770 ARID Transcription Factor Family AT3G43240 59.7 3.6e-267 917.9
Cmetu01g0203 . 2 771 ARID Transcription Factor Family AT3G43240 57.5 2.1e-259 892.1
Cmetu01g1064 . 32 771 ARID Transcription Factor Family AT3G43240 59.1 3.6e-259 891.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004427 1 1 1 3 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 6 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7930 PF01388 ARID 2.00E-17 CL0123 Cmetu TR