Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1123 ATGGAATTTGAAGAGCAACAACAAGAAGCACTTCTGTTGCAAAAAGTTTGTGCTCTTTACAACCAAATCTCAAGCCTTTCTAGCCTTAAGCCTTGTAAAAATGTCGACACTCTTTTCACTCAACTCGTCCTCACGTGCTCACCACCTGCCCCAATTGGCTTTGATATTGCTTCTTTGTCTCAGCCACTTCAAGCCATGAGGACTCATCTCATTCAACTTTGTGCCAAAGCTGAGGCTCTCCTTGAACTTCATTTCTCTTCCCTTTTGGCTTCTTCGTTTCATCATCCTATTTCTAATTTGTCTGTCTTCCCTTACTACTCTAATTACTTGAAGCTTTCCCTTCTTGAGTTTGATATTCTTCGATCTCATTCTCGTCGTCTCCCCGATAAAGTTGCCTTTGTTGGCTCCGGTCCCCTCCCACTCTCCTCCATTGTCTTGGCGTCTATTCATCTTAAGGGTACTATTTTCCACAACTTTGACATTGATCCAACAGCAAACACCATGGCAAGTCAATTGGTTTGCTCTGACCCAGACTTATCACAAAGAATGATATTTCACACAAAAGATGTAATGGAAGTATCAAAGGGATTAAAAGATTATGAAGTAGTGTTCTTAGCAGCATTAGTTGGATTAGAAGAGGAAGAAAAAGGAAGAGTTTTAAAGCATTTGGGGAAACATATGGCAGCTGGTTCATATTTGATGCTAAGAAGTGCTCATGGAGCAAGAGCATTTTTGTACCCTGTTGTTGATATTTGTACTGTTGAAGCTTCTGGATTTGAGATTTTGTCTGTGTTTCATCCCACTGATGAAGTTATTAACTCCGTTGTTATTGCAAAGAAGAAAGTCGTGTTCGATCAAAGTTCAGTCGAGGACGAGGACGAGGAGGAGGAGGAGGAGAAGCGAGGTATTTTAGTTAATACTTCTTCTATTGTGTTGGCTGAGAAATGCTCTGGGTTTAATGGCTTTACTCCCATGATTGAAGAGCAACTTTCATGA 996 40.76 MEFEEQQQEALLLQKVCALYNQISSLSSLKPCKNVDTLFTQLVLTCSPPAPIGFDIASLSQPLQAMRTHLIQLCAKAEALLELHFSSLLASSFHHPISNLSVFPYYSNYLKLSLLEFDILRSHSRRLPDKVAFVGSGPLPLSSIVLASIHLKGTIFHNFDIDPTANTMASQLVCSDPDLSQRMIFHTKDVMEVSKGLKDYEVVFLAALVGLEEEEKGRVLKHLGKHMAAGSYLMLRSAHGARAFLYPVVDICTVEASGFEILSVFHPTDEVINSVVIAKKKVVFDQSSVEDEDEEEEEEKRGILVNTSSIVLAEKCSGFNGFTPMIEEQLS 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 4003082 4004967 + PI0022033.1 Cmetu05g1123 356827

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1123 331 Gene3D Vaccinia Virus protein VP39 14 282 IPR029063 -
Cmetu05g1123 331 Pfam Nicotianamine synthase protein 6 282 IPR004298 GO:0030410|GO:0030418
Cmetu05g1123 331 ProSiteProfiles Nicotianamine synthase (NAS)-like family profile. 4 285 IPR004298 GO:0030410|GO:0030418
Cmetu05g1123 331 PANTHER NICOTIANAMINE SYNTHASE 3 4 293 IPR004298 GO:0030410|GO:0030418
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1123 K05953 - - csv:101203651 560.451
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0264 Cmetu-Chr2:363611 Cmetu05g1123 Cmetu-Chr5:4003082 4.50E-95 dispersed
Cmetu05g1650 Cmetu-Chr5:3991225 Cmetu05g1123 Cmetu-Chr5:4003082 5.40E-83 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu02g0264 . 1 274 Nicotianamine Synthase Gene Family AT1G09240 59.6 1.9e-92 336.3
Cmetu05g1650 . 1 277 Nicotianamine Synthase Gene Family AT1G09240 59.0 1.7e-88 323.2
Cmetu05g1123 . 8 279 Nicotianamine Synthase Gene Family AT1G09240 59.0 1.7e-88 323.2
Cmetu02g0920 . 18 281 Nicotianamine Synthase Gene Family AT1G09240 56.0 1.1e-74 277.3
Cmetu02g0264 . 3 274 Nicotianamine Synthase Gene Family AT1G56430 61.5 1.6e-97 353.2
Cmetu05g1123 . 8 279 Nicotianamine Synthase Gene Family AT1G56430 59.7 9.7e-92 334.0
Cmetu05g1650 . 3 277 Nicotianamine Synthase Gene Family AT1G56430 59.8 1.3e-88 323.6
Cmetu02g0920 . 18 281 Nicotianamine Synthase Gene Family AT1G56430 54.5 4.7e-78 288.5
Cmetu05g1650 . 1 277 Nicotianamine Synthase Gene Family AT5G04950 56.4 4.9e-88 321.6
Cmetu05g1123 . 8 279 Nicotianamine Synthase Gene Family AT5G04950 56.9 2.1e-86 316.2
Cmetu02g0920 . 18 281 Nicotianamine Synthase Gene Family AT5G04950 50.7 1.4e-71 266.9
Cmetu02g0264 . 1 274 Nicotianamine Synthase Gene Family AT5G56080 56.9 3.8e-88 322.0
Cmetu05g1123 . 11 279 Nicotianamine Synthase Gene Family AT5G56080 57.4 4.2e-87 318.5
Cmetu05g1650 . 1 277 Nicotianamine Synthase Gene Family AT5G56080 55.9 2.7e-86 315.8
Cmetu02g0920 . 18 281 Nicotianamine Synthase Gene Family AT5G56080 50.9 4.6e-70 261.9
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000408 6 4 3 6 6 4 4 4 4 4 3 4 4 4 4 4 4 5 4 4 4 4 4 3 6 5 3 4 5 2 125