Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1135 ATGAAGCAGCCTCCTTGCTGCATATCTCACGAGTTTCAAAGGGTTGCATTATCTCATCCTGGAAAAATAGCTGTAATCCATGCCTCCGGTGGAGTTCAACTTTTCCGCCAGTTACACGGTGGCGGCGGAGGCGGCGAAGCTGATGATTTCTTCCAGGGGCGCGCCACATCCGCTTTTCCTCCCATGTACGAAGGCGACCGGTGCTTCACTTACTCGCAGCTGTTGGCCTCCGTTGATTCTCTCAGCTCCCGCCTTCTTGCAACCCTTCGTGGTCTTCAATTAAACGCGCCTACTGCACCTTGCCCAGCGAATGATCAGCCGGCAAAGACTAGTCCAGTGGCTAATGAATTGTCTGAAGCATCAACTGAGCTTGAGAGCAGTAATATACCGAAAATATTTGGAATATATATGCCTCCTTCAGTTGAATACATAATTTCTGTTCTTTCTGTACTGAGATGCGGAGGGGCTTTTATGCCGTTGGATCCTGCATGGCCTAAAAGTAGGATTCTGTCAGTTGTTTCTTCGTCGAAAATTGATCTTATTATCTACTCTGGGTCTTCATTTTGTGAAGATGGCTATCATGTGACTGAGGGATTTCGTTGGCTCGAGGAAATCAGTGGTTATTCAACCCTTTGTTTTACTATGGAAGAAAATTCTGTTCGAGAGCATAATAGTGCAGTTGATTTAGTTTTTCCTTGTGAGGATGAGAAAGCGAGGTTGTTTTGTTATGTTATGTATACATCTGGATCTACTGGAAAGCCTAAAGGCGTATGTGGCACTGAACAAGGTCTTCTAAATCGCTTTCAATGGATGCAAGAAAATTTTCCTTCAAGCAGAGAGGAACTTTTATTATTCAAGACATCAATTAGCTTTATTGATCACATTCAAGAATTTCTTAGTGCCATATTAACATCTTCTGCCTTGGTTATACCTCCAATGAAAGAGCTGAAAGAAAATTTATGTTCTGTTGTCAATTTTATTCAGGCGTATTCTATTAATAAGCTTACTGCTGTTCCATCACTAATGAGGACACTCCTTCCTGCATTGCAAAGACTCTGTGGGGTCAAATGTTCCCTGAGATTGTTAATTCTGAGTGGTGAAACTCTGCCAATACTGCTATGGAATGCACTTGTCAAGCTATTACCAGAAACCACTATTTTGAATTTGTATGGTAGTACGGAGGTATCTGGTGATTGTACATATTTCGATTGCAAGAAACTGCCAATGATTTTGGAGACAGACGCAATCAGCACTGTTCCAATTGGTGTGCCGATTTCTCACTGTGATGTTGTGGTTGTTGGTGACAATGATGCACTGAACCAGGGAGAACTATGTGTTGGTGGTCCCTGTGTATGCAGTGGATATTATTCAGATTCTGTTTTTCTCCCTTTGGATGGTATAAAGTTTTCTCAGGACTTTATTCATGAAGGTTCATTCAATGTAAACTGTAATCACATTTATATCAGGACTGGTGATTTTGTCCAACAGCTTCGAAGTGGTGACTTGGTGTTCTTGGGGAGAAAAGATCGTAGTATCAAAGTTAATGGGCAACGTATTTCTCTAGAAGAGATTGAGGATGCTTTAAGGGAACATCCGGATGTAGTAGATGCAGCTGTTGTTTCCAGGAAAAGTGATTTGGAACTTGAGTATCTAGTGGCGTTTCTAGTTTTAAAAGCTAACAAGAAAAGTGAAGTATTCAGATCCACTGTCAGAAGTTGGATGGTGGAAAAAGTTCCATTGGCTATGATTCCAAATAGCTTTTTCTTCATTGACTCAATTCCTATGACAACCAGTGGAAAAGTTGATTACGAGATCTTGACGCATTCAAGACCTCTTTGGGAGTATGTTCATGAAAATATTGATGAAACTGGGGCAAATGAATTCATTCAAATCATAAAAAAGGCCTTTTCCGATGCTTTAATGGTTGAAGAGATCTCCAGTGATGACGACTTCTTTACAATGGGTGGTAACTCAATAACTGCAGCGCATGTTTCACATAGATTAGGGGTTGATATGAGATGGCTGTATCACTATCCAAGTCCAGCTAAGCTTCTTACGGTTATTCTAGAGAAGAAAGGATTGGATATCATATGTATCAATGGGGATGCTGACTCAAGAAGGAACCTGAAAACTGATAGGTGGAACAAATATTCTTTGGATGATTATGAGTTTCTGAACCATTTTGATCTTAAAGAGGGTGGGAGTTCTGGAAAAAGGAAACAAGTTCAACCAAATGGTGGTTTTTCAAGGGCAGTTGTACCAAGGAATAACAATTCTTTAATGTCGAAACACTATAAGGCGGTTTCTGACTGTTCTATCAATTTGGAAGATATAAGTCAAGTTGGTGGACACCTGTGGAATTCTCCTTTAACATCTGTGTCATGTGCATTCAGTCGATGCAACAAGGTTGTTTATGAACACAAGTACATTGGTGATAATGAATGTGCAGGAACTTTGTCGGTAAAGTTCCCAAGAGGTGAAATTGGTTCTATGAAAAAACTATGGCAAGTTCATATGGAGTCTTGCGTGGATGCTTCACCACTTCTTGTGTTTAAACACCCCAATATCTACTTGTTTATTGGTTCTCACTCACATAAGTTTGTCTGCGTGGATGCAAAAAATGCTTCTCTTCAATGGGAGATAAGGCTAGAAGGAAGAATTGAATGTTCCGCGGCAATTGTTGGGGACTTTTCTCAGGTTGTAGTAGGATGCTACAAAGGGAAGATATATTTTCTCGAGTTTTCCACTGGTATTGTCCAATGGACATTCCAAACGTCTGGTGAGGTAAAGTCGCAGCCTGTGGTTGACCCAGATAGAAATTTGATCTGGTGTGGATCATATGACCATAACTTATATGCACTTGACTACGTGAGGCATTCTTGTGTTTATAAACTTCCATGTGGAGGAAGTTTATATGGATCACCTGCAATTGATGGGGTTCAACATAGACTTTATGTGGCTTCAACCGGTGGACGAATAAGTGCTCTATTGATAAAGGATTTCCCTTTCAATTCTTTGTGGGATTATGATCTAGAAGCGCCAGTCTTTGGATCCCTTGCAGTTGATCCACTTACTAGAAATGTTATTTGTTGCCTGGTGGATGGTCATGTTGTTGCGTTGGATTCAAATGGATCTGTTTCATGGAAGTGTAAAACTGGAGGCCCTATATTTGCTGGACCCTGCATATCCACTTCCATTCCTTCGCAGGTTCTCATATGTTCCAGAAATGGAAGCATTTATTCTTTTGAACTGGAAAGTGGAGATTTAGTGTGGGAGTACGACATTGGCAATTCAATAACTGCATCTGCTTGTGTTGATGAGCATCTGCAACTTGTTCCTGAAACTTCCATCTCCTCGGACAGGCTGATATGTGTTTGCTCCAGTTCTGGATCCATACATTTGCTTCGAGTAAAGTTGAATGCAACACAGGAGGGAAATTACCAGAACACAAATGTGGAAGAATTTGGTAGGTTAGATCTTGAAGAAGACATATTTTCCTCACCTGTTATGATAGGTGGACGCATTTTTGTCGGTTGCCGAGATGATTATGTGCACTGTGTTGTGATTGGTAACCTTAACACCAAAAGAAATAGTAGTAGTACATAG 3606 40.79 MKQPPCCISHEFQRVALSHPGKIAVIHASGGVQLFRQLHGGGGGGEADDFFQGRATSAFPPMYEGDRCFTYSQLLASVDSLSSRLLATLRGLQLNAPTAPCPANDQPAKTSPVANELSEASTELESSNIPKIFGIYMPPSVEYIISVLSVLRCGGAFMPLDPAWPKSRILSVVSSSKIDLIIYSGSSFCEDGYHVTEGFRWLEEISGYSTLCFTMEENSVREHNSAVDLVFPCEDEKARLFCYVMYTSGSTGKPKGVCGTEQGLLNRFQWMQENFPSSREELLLFKTSISFIDHIQEFLSAILTSSALVIPPMKELKENLCSVVNFIQAYSINKLTAVPSLMRTLLPALQRLCGVKCSLRLLILSGETLPILLWNALVKLLPETTILNLYGSTEVSGDCTYFDCKKLPMILETDAISTVPIGVPISHCDVVVVGDNDALNQGELCVGGPCVCSGYYSDSVFLPLDGIKFSQDFIHEGSFNVNCNHIYIRTGDFVQQLRSGDLVFLGRKDRSIKVNGQRISLEEIEDALREHPDVVDAAVVSRKSDLELEYLVAFLVLKANKKSEVFRSTVRSWMVEKVPLAMIPNSFFFIDSIPMTTSGKVDYEILTHSRPLWEYVHENIDETGANEFIQIIKKAFSDALMVEEISSDDDFFTMGGNSITAAHVSHRLGVDMRWLYHYPSPAKLLTVILEKKGLDIICINGDADSRRNLKTDRWNKYSLDDYEFLNHFDLKEGGSSGKRKQVQPNGGFSRAVVPRNNNSLMSKHYKAVSDCSINLEDISQVGGHLWNSPLTSVSCAFSRCNKVVYEHKYIGDNECAGTLSVKFPRGEIGSMKKLWQVHMESCVDASPLLVFKHPNIYLFIGSHSHKFVCVDAKNASLQWEIRLEGRIECSAAIVGDFSQVVVGCYKGKIYFLEFSTGIVQWTFQTSGEVKSQPVVDPDRNLIWCGSYDHNLYALDYVRHSCVYKLPCGGSLYGSPAIDGVQHRLYVASTGGRISALLIKDFPFNSLWDYDLEAPVFGSLAVDPLTRNVICCLVDGHVVALDSNGSVSWKCKTGGPIFAGPCISTSIPSQVLICSRNGSIYSFELESGDLVWEYDIGNSITASACVDEHLQLVPETSISSDRLICVCSSSGSIHLLRVKLNATQEGNYQNTNVEEFGRLDLEEDIFSSPVMIGGRIFVGCRDDYVHCVVIGNLNTKRNSSST 1201
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 10389256 10412310 + PI0025333.1 Cmetu05g1135 356839

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1135 1201 Pfam AMP-binding enzyme 133 514 IPR000873 -
Cmetu05g1135 1201 SUPERFAMILY Acetyl-CoA synthetase-like 5 606 - -
Cmetu05g1135 1201 PANTHER BETA-ALANINE-ACTIVATING ENZYME 5 1188 - -
Cmetu05g1135 1201 FunFam D-alanine--D-alanyl carrier protein ligase 509 610 - -
Cmetu05g1135 1201 Pfam PQQ-like domain 919 955 IPR002372 -
Cmetu05g1135 1201 SUPERFAMILY ACP-like 626 688 IPR036736 -
Cmetu05g1135 1201 FunFam Putative acyl-activating enzyme 19 1001 1190 - -
Cmetu05g1135 1201 Gene3D - 511 633 IPR045851 -
Cmetu05g1135 1201 FunFam Putative acyl-activating enzyme 19 57 508 - -
Cmetu05g1135 1201 Gene3D - 634 694 IPR036736 -
Cmetu05g1135 1201 Gene3D - 106 509 IPR042099 -
Cmetu05g1135 1201 Pfam AMP-binding enzyme C-terminal domain 523 600 IPR025110 -
Cmetu05g1135 1201 ProSitePatterns Phosphopantetheine attachment site. 653 668 IPR006162 -
Cmetu05g1135 1201 Pfam PQQ-like domain 981 1155 IPR002372 -
Cmetu05g1135 1201 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 829 1187 IPR011047 -
Cmetu05g1135 1201 Gene3D - 817 1001 IPR015943 GO:0005515
Cmetu05g1135 1201 Gene3D - 1002 1200 IPR015943 GO:0005515
Cmetu05g1135 1201 ProSitePatterns Putative AMP-binding domain signature. 244 255 IPR020845 -
Cmetu05g1135 1201 SMART ire1_9 1020 1051 IPR018391 -
Cmetu05g1135 1201 SMART ire1_9 1064 1094 IPR018391 -
Cmetu05g1135 1201 SMART ire1_9 891 924 IPR018391 -
Cmetu05g1135 1201 CDD A_NRPS 65 603 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1135 K00142 - - csv:101203465 2273.05
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1135 Cmetu-Chr5:10389256 Cmetu06g1623 Cmetu-Chr6:24631313 4.30E-20 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi18g128 . . . . . . . . . . Cma01g02002 Cma09g00069 Car01g01572 . . . . . . . . . . . . . . . . . . . . . . Lsi04g01792 Csa04g02685 . . Blo17g00714 . Bda08g01177 . . . . . Sed08g2452 Cmo01g02061 Cmo09g00069 . . . Car09g00060 . . Bhi09g02929 Tan01g5083 Cmetu05g1135 . Hepe01g2324 Mch11g0071 . Cla05g01577 Cam05g1685 Cec05g1691 Cco05g1735 Clacu05g1675 Cmu05g1567 Cre05g1684 . . Chy07g00376 Cme07g00071
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006078 1 3 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 3 7 1 39