Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1173 ATGCAGTCGAAGTCTAAAAGTGTGAATCAACTAGAATCTGAACCACCAAATATGCAGCAGACTAGTAGTTATTCGGAACCTTGGTGGCGTAGTATCGGGTACAATCATATCTCCCCACCAGCAGCTGGAGGAAATGTGTCCAATTCAACATCACTGGAATGCACTAATGGTGCTTCAGAATCTAATGATGGTCAGTCAATGTCAAATGATGATTTAAATGAAGATGATGATGATGACACCACAAAAGATTCACATGCAAGTTATGGGCAAGTACAGCACAACTGTCAGCATGCTGTTTCTGCTGCGCCTATAGTGCATGGTGGATGTATCACGCAACCTCCTCAGCTTGAACTTGTAGGCCATTCTATTGCATGTGCATCAAACCCATATCAGGATCCTTATTATGCAGGAGTGATGGCTGCCTATGGGCATCAACCGGGTTACCCTCCTTTTCTTGGGATGCCACATGCTAGAATGGCGTTGCCCCTTGAGGTGACACAGGAGCCTGTTTTTGTGAATGCCAAACAATATCAAGGGATTCTAAGGCGAAGACAAGCACGTGCTAAAGCAGAGGTTGAGAACAAACTAATAAAAGTTAGAAAGCCATATCTGCATGAATCTCGTCACCAGCATGCCATGAGACGGGCAAGGGGTAGTGGAGGACGATTTGCCAAGAAAAATGAAGCTAATTCCTCGGGTTCTACTATGAAGGACAAGGACTCCGGTTCTGGTCAAGCTATCTCATCTCACTCTGCTGGTTCATCTGGTTCTGAAGCAGCACCTTGTGCCTTGGCCGAAACCTGGAATTCTTCCAATGGCCAACAAGAAGCAAGGACCCAGTTGCATGAGGCATATGAAGCTCGAAGTTATGTGAATGGAAGTAGCCAATTTCATAATTACAGTAGCTTCCAAGCTTCTTCCTATGGTTTACGGTCTGGTGAGAGAGGCGATGATGGAGACTGCTCGGGACAGCAGCGAAGTATCTCAGAAAATCAGGCTGCACAGAGGCGTCTTGCCATCAAGTGA 1026 46.0 MQSKSKSVNQLESEPPNMQQTSSYSEPWWRSIGYNHISPPAAGGNVSNSTSLECTNGASESNDGQSMSNDDLNEDDDDDTTKDSHASYGQVQHNCQHAVSAAPIVHGGCITQPPQLELVGHSIACASNPYQDPYYAGVMAAYGHQPGYPPFLGMPHARMALPLEVTQEPVFVNAKQYQGILRRRQARAKAEVENKLIKVRKPYLHESRHQHAMRRARGSGGRFAKKNEANSSGSTMKDKDSGSGQAISSHSAGSSGSEAAPCALAETWNSSNGQQEARTQLHEAYEARSYVNGSSQFHNYSSFQASSYGLRSGERGDDGDCSGQQRSISENQAAQRRLAIK 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 22022307 22027838 - PI0001388.1 Cmetu05g1173 356877

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1173 341 PRINTS CCAAT-binding transcription factor subunit B signature 169 191 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 PRINTS CCAAT-binding transcription factor subunit B signature 200 223 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 1 86 - -
Cmetu05g1173 341 ProSitePatterns NF-YA/HAP2 subunit signature. 171 191 IPR018362 GO:0003677|GO:0016602
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 225 256 - -
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 1 29 - -
Cmetu05g1173 341 ProSiteProfiles NF-YA/HAP2 family profile. 166 226 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 Gene3D - 166 228 - -
Cmetu05g1173 341 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 168 223 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 204 220 - -
Cmetu05g1173 341 SMART cbf3 165 226 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 204 260 - -
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 41 68 - -
Cmetu05g1173 341 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 12 280 IPR001289 GO:0003700|GO:0006355
Cmetu05g1173 341 MobiDBLite consensus disorder prediction 307 341 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1173 K08064 - - csv:101212961 640.188
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu02g0337 Cmetu-Chr2:4526890 Cmetu05g1173 Cmetu-Chr5:22022307 9.00E-75 dispersed
Cmetu04g0150 Cmetu-Chr4:5757300 Cmetu05g1173 Cmetu-Chr5:22022307 2.30E-24 dispersed
Cmetu04g1576 Cmetu-Chr4:644649 Cmetu05g1173 Cmetu-Chr5:22022307 1.20E-28 dispersed
Cmetu05g1173 Cmetu-Chr5:22022307 Cmetu08g1836 Cmetu-Chr8:8326569 5.70E-26 dispersed
Cmetu01g1062 Cmetu-Chr1:26178320 Cmetu05g1173 Cmetu-Chr5:22022307 8.40E-45 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1173 . 18 271 CCAAT-HAP2 Transcription Factor Family AT5G12840 51.5 4.0e-54 208.8
Cmetu02g0337 . 58 232 CCAAT-HAP2 Transcription Factor Family AT3G20910 59.9 2.4e-44 176.4
Cmetu04g1576 . 59 199 CCAAT-HAP2 Transcription Factor Family AT2G34720 59.3 1.1e-38 156.8
Cmetu04g1576 . 1 199 CCAAT-HAP2 Transcription Factor Family AT1G30500 55.3 3.2e-50 195.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001124 3 6 3 3 3 2 4 2 1 2 2 2 3 2 2 4 2 4 4 2 2 2 2 2 2 2 2 6 2 1 79
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7936 PF02045 CBFB_NFYA 1.90E-26 No_clan Cmetu TF