Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1284 ATGGCGGTCGATAAACTTCTGAAGGATGAAGCCAGCGAAGAGAAGGGAGAGCGTGCTCGAATGGCATCATTCATTGGCGCAATGGCAATTGCTGATTTGGTTAAGACAACATTAGGACCTAAAGGGATGGATAAAATTCTCCAATCTACTGGCAGAGGAAGGCAAGTCACCGTCACCAATGATGGTGCCACCATTTTAAAATCTCTCCATATCGACAATCCAGCTGCCAAAGTTCTTGTCGATATTTCAAAAGTTCAAGATGATGAGGTGGGTGATGGTACAACCTCAGTTGTTGTTTTGGCTGGAGAACTTCTAAGGGAGGCAGAGAAGTTGGTTGCTTCAAAGATTCACCCAATGACAATTATAGCAGGCTATAGAATGGCTGCAGAATGTGCTCGTAATGCCTTACTGCAGAAAGTGGTGGATAACAAAGCAGATCTAGAGAAATTTAAATCAGACTTGTTGAAGATTGCAATGACTACTTTGAGTTCCAAAATTCTCTCACAAGACAAGGAACATTTTGCTAAGTTGGCAGTGGATGCTGTAATGAGGCTAAAGGGGAGCACAAACTTGGAATCAATTCAAATTATCAAGAAACCTGGAGGATCATTGAAGGATTCCTTTTTAGATGAAGGGTTTATTCTTGACAAGAAAATTGGTATTGGCCAACCCAAACGCATAGAGAACGCCAAAATTTTAGTGGCAAATACCGCTATGGATACTGACAAAGTTAAGATTTATGGTGCTCGAGTTCGTGTTGACTCAATGTCAAGAGTTGCTGAGATCGAGGGTGCTGAAAAGGAAAAAATGAGAGAAAAGGTGAAGAAGATAATTGGTCATGGAATCAACTGCTTTGTTAACAGACAGTTGATCTACAATTTCCCAGAGGAACTATTTGCAGATGCTGGAATACTTGCTATTGAGCATGCTGATTTTGATGGTATTGAACGCCTGGCTTTAGTAACTGGTGGTGAAATTGCTTCAACTTTTGACAATCCCGAATCTGTGAAACTTGGATATTGCAAGTTGATTGAGGAGATTATGATTGGCGAGGACAAACTGATCCATTTTTCAGGTGTGGAAATGGGTCAGGCTTGCACAATTGTGCTGAGGGGTGCAAGCCATCACGTCCTTGATGAGGCTGAAAGGTCTCTACATGATGCCTTGTGTGTACTGTCTCAGACAGTTAATGACAGCAGGGTCGTGCTTGGAGGTGGATGGCCAGAGATGATCATGTCAAAAGAAGTGGATGAGTTGGCTAGAAAGACTCCCGGAAAGAAATCACATGCTATTGAAGCTTTTTCACGGGCTCTGCAGGCTATTCCAACAATCATTGCTGATAATGCTGGGTTGGATAGTGCCGACTTGATTGCACAGCTCCGGGCTGAGCATCACAAGGAGGGTTGCAATGCAGGGATTGATGTCATCTCTGGATCGGTAGGAGATATGGCAGAACTTGGTATTTCAGAAGCATTCAAAGTGAAGCAAGCCATATTGCTTTCTGCAACAGAGGCAGCTGAGATGATTCTTAGAGTTGATGAAATCATCACTTGTGCCCCCAGGAGGAGAGAAGATAGAATGTAA 1584 42.99 MAVDKLLKDEASEEKGERARMASFIGAMAIADLVKTTLGPKGMDKILQSTGRGRQVTVTNDGATILKSLHIDNPAAKVLVDISKVQDDEVGDGTTSVVVLAGELLREAEKLVASKIHPMTIIAGYRMAAECARNALLQKVVDNKADLEKFKSDLLKIAMTTLSSKILSQDKEHFAKLAVDAVMRLKGSTNLESIQIIKKPGGSLKDSFLDEGFILDKKIGIGQPKRIENAKILVANTAMDTDKVKIYGARVRVDSMSRVAEIEGAEKEKMREKVKKIIGHGINCFVNRQLIYNFPEELFADAGILAIEHADFDGIERLALVTGGEIASTFDNPESVKLGYCKLIEEIMIGEDKLIHFSGVEMGQACTIVLRGASHHVLDEAERSLHDALCVLSQTVNDSRVVLGGGWPEMIMSKEVDELARKTPGKKSHAIEAFSRALQAIPTIIADNAGLDSADLIAQLRAEHHKEGCNAGIDVISGSVGDMAELGISEAFKVKQAILLSATEAAEMILRVDEIITCAPRRREDRM 527
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 183541 189112 + PI0026354.1 Cmetu05g1284 356988

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1284 527 ProSitePatterns Chaperonins TCP-1 signature 2. 58 74 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmetu05g1284 527 SUPERFAMILY GroEL equatorial domain-like 13 519 IPR027413 -
Cmetu05g1284 527 SUPERFAMILY GroEL apical domain-like 206 372 IPR027409 -
Cmetu05g1284 527 NCBIfam thermosome subunit alpha 6 518 - -
Cmetu05g1284 527 Pfam TCP-1/cpn60 chaperonin family 30 517 IPR002423 GO:0005524
Cmetu05g1284 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 56 74 IPR017998 GO:0140662
Cmetu05g1284 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 32 48 IPR017998 GO:0140662
Cmetu05g1284 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 401 413 IPR017998 GO:0140662
Cmetu05g1284 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 86 105 IPR017998 GO:0140662
Cmetu05g1284 527 PRINTS Tailless complex polypeptide 1 (chaperone) signature 367 389 IPR017998 GO:0140662
Cmetu05g1284 527 Gene3D - 27 516 IPR027413 -
Cmetu05g1284 527 FunFam Chaperonin containing TCP1 subunit 2 142 215 - -
Cmetu05g1284 527 FunFam T-complex protein 1 subunit beta 211 363 - -
Cmetu05g1284 527 NCBIfam thermosome subunit beta 6 517 - -
Cmetu05g1284 527 Gene3D - 142 399 IPR027410 -
Cmetu05g1284 527 CDD TCP1_beta 7 522 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
Cmetu05g1284 527 ProSitePatterns Chaperonins TCP-1 signature 3. 86 94 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmetu05g1284 527 Gene3D GroEL 211 363 IPR027409 -
Cmetu05g1284 527 ProSitePatterns Chaperonins TCP-1 signature 1. 35 47 IPR002194 GO:0005524|GO:0006457|GO:0016887|GO:0051082
Cmetu05g1284 527 PANTHER CHAPERONIN 9 520 IPR017998 GO:0140662
Cmetu05g1284 527 FunFam T-complex protein 1 subunit eta 27 141 - -
Cmetu05g1284 527 FunFam T-complex protein 1 subunit eta 400 517 - -
Cmetu05g1284 527 SUPERFAMILY GroEL-intermediate domain like 152 399 IPR027410 -
Cmetu05g1284 527 NCBIfam T-complex protein 1 subunit beta 6 523 IPR012716 GO:0005524|GO:0005829|GO:0005832|GO:0006457|GO:0016887|GO:0051082
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1284 K09494 - - csv:101206611 1009.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g0421 Cmetu-Chr5:12460127 Cmetu05g1284 Cmetu-Chr5:183541 3.40E-81 dispersed
Cmetu05g1284 Cmetu-Chr5:183541 Cmetu12g0023 Cmetu-Chr12:1429255 7.40E-81 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi17g262 Blo04g00835 Blo16g00127 . . . Bpe13g00366 Bma06g00054 . Cmo13g01041 . . . . . . Cpe20g00139 . . . . . . . . . . . . . . . . . . . Lsi02g00217 Csa01g00699 Chy12g01413 Cme12g01847 . . Bda11g01779 . . Bpe15g00534 . . Sed02g0902 . . . Cma18g00056 . . Cpe09g01125 . Bhi08g01269 Tan05g2218 Cmetu05g1284 Lac10g0271 Hepe07g2368 . . Cla04g01064 Cam04g1107 Cec01g1621 Cco01g1668 Clacu04g1132 Cmu04g1116 Cre01g1417 . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005792 1 2 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 2 1 3 1 1 2 1 1 39