Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1320 ATGATTATTATTTTAATTAAACCAGAAGAAAACCATGGAAAAAGGGCATTTAATCTGTTAGATGTGGTGGTACTGGATACGGGTTCTCCTACATATGACTTAGTTGCTCTAATTTTAAGTGATATGGGGACAGAGCTTATAAGAGTTTGTGTTGAAGATGATAGTGATGACTTTCCATCGGTTCCACCAGGTTTTGAGTCATATATATCCTTTTCTCTTGGGAAGGTGCACAATCTTGAAAAACAAGACAGTCATGCCCCTGTTAGTTTGCCAACTGTCTCCGAATCACAACCAGTTAATGTGGGAAGTGAGGTAGACGTTGCCAAAGTTGCAAAAGTTACAAGGTCCCTCCGGCGTAAACCATGTGTAAACTATAAACAATATGATTACTGCTCTGATGATGAGATTAATAGTACTAAATGTCTAGATCAGAATTCTTCTTTAAGGCCTTCTCTATCAAAGGGAGTCATCCGTGGATGTCCGCAATGTAATAATTGCCAAAAGGTTGTTGCCAGATGGCATCCAGAAGAATCCTGCCGGCCAAACCTTGAGGATGCACCTGTGTTTTACCCAACCGAAGAGGAATTTGGAGATACTTTGACATATATAGCCAGCATACGGGAAAAAGCAGAACCATATGGGATTTGTCGTATTGTTCCGCCATCTTCTTGGAAACCTCCATGTCCCCTGAAGCAGAAACATATTTGGGAGGGTTCTAAATTTGTAACTCGTGTCCAAAGGATTGATAAGCTCCAAAACCGAGAGTCAATAAGAAAGAACTCTAGGGTTTGCAGTCAGATGAGAAGGAAAAGGAGGAGGTGCAATCGAAAGGGGGTTGATGTTACCACCTTAAATGGAAAAAATGCTGATGCTGGATCTGTTGAGGCCGAAAGATTTGGATTTGATCCTGGTCCTGATTTTACCTTGGCAATGTTTCAAAAATACGCAGATGACTTTAAGTCTCAATATTTTAGTAAACCACTCATCGATACTGCGAAGGGATGTAACCCTTCCATGCTGCAAGACAATGAAAATTGGAAACCTTCTTTGGAAGCTATTGAGGGTGAATACTGGCGGATGGTAGAGAAACCAACTGAAGAGATTGAGGTTCTCTATGGGGCTGATTTGGAAACCGGAGAGTTTGGTAGCGGTTTTCCAAAGATTAGCTGTCAAGAGGGTTCTACATTAGATGAAGAGAAGTATGTAAAATCTGGCTGGAACCTGAATAACTTTCCGAAGCTTCCTGGATCAGTACTTAGCTATGAGAGCAGTAATATATCTGGAGTCTTGGTACCATGGCTGTATATCGGGATGTGCTTTTCGTCTTTTTGCTGGCATGTTGAAGATCACCACCTCTACTCTCTGAACTACATGCACTGGGGAGATCCCAAAGTCTGGTATGGTGTTCCAGGAAATGGTGCCGGGAAATTAGAGGAGGCTATGAGAAAGCATTTACCTAACCTCTTTCAAGAACAACCAGATTTACTCCATAAACTGGTTACACAACTTTCTCCATCCATATTGAAAAGCGAGGGTGTACCTGTATATAGGTGTATTCAGAATCCTGGAGAGTTTGTTTTGACCTTCCCTCGTGCATACCATTCAGGATTCAACAGTGGTTTTAATTGTGCTGAGGCAGTTAATGTAGCTCCAGTTGACTGGTTGCCCCATGGTCAAATTGCTGTAGAATTGTATCGTGAACAGGGACGAAGAACTACTATTTCCCACGATAAGCTATTGCTTGGTGCTGCTCGAGAAGCTGTGAGAGCACACTGGGAACTTAATTTACTGAAAAAGAATACTTTGGATAACTTAAGATGGAATAGTGTTTGCGGAAAAGATGGAATCTTAGCAAGAGCATTCAAGACTCGTGTTGAGATGGAGCGTGCAAGGAGGAACCTTCCTTGCAGTTCTTCCCAGGCAATGAAGATGGAGAGCAACTTTGATGCCTCTAATGAGAGAGAATGCAGTTCATGCCTCTTTGATTTGCATCTGTCTGCAGTTGGGTGTCGTTGTTCACCAGATAAATATGTGTGCTTGAATCATACCAAGCAGTTGTGTTCTTGTGCGTGGGAAGAGAGAATTTTTCTCTTTCGCTATGACATAAGTGAATTGAACATACTTCTTGAAGCATTGGAAGGAAAATTAAGTGCAGTATACAGGTGGGCTAGGCAGGATCTTGGTCTGGCGCTTAGTACATCTAGGGAGTTGAGTTCTCAATCATCAACAAAATCCAATGGGAATCCTCAATGGAAAGAATTATTGAGGCAATCTTCGTTATTACCAACTCTAACTGCTTTAAACAGTCCTCATCATGCCAAAAAGTTATCTGAAGTTACTACCTCTTTTTTAGAAGTTAAGAAGGTAATTTCCACAGTTAACGGATCTGAGAAGGAAATTGGGCTGCAAAATCATAAAATGGAGGTGAAAAAAGAAAGCCATGACCTTGTGGCAACCAATTCAAGACATGCAGATTCACAGTCCTGTAAGGAAGATACAAATGCTCTGAATAAGATAGAAGTGAAAAGTACCATGGATAAAATGTGTCCTGAAAATGTCATACTATTAAGTGATGATGAAGGTGATGAGCATAAGAAGACAATTTCAAATGGTTTAGCTGAAAGTTCATCAGTAAAGCAGCTGGGAAATTCCGATCGGTTCACTGAGATTGATTCTAAGGCTAGCCTGTGCAACTACAATGAAAATGCCATTTTGCACACTCCAGCGACTGATGCAACGACCATGGGAGACAAGGAGGTCAACTTGTTGATTGAAAAAAGATTGAATAATTGTCAATCGAGCATTGTACCTTTAAATAGTAAACAGTCTCAAAACATTAACTTCTCTGTTAGAAATACAGCTAATGGTATTCAGAACAACACAAGTTCAGATTCGGGATTAGGTCATAGTAATAGAGAATTTCTAGCGTCAACAGACAATGATTGTCAAAAACCACAGACATGTGGCTATGGAAAACTGAATGAGGGTACTCATGGAAATGCAGGAATGAGTGCTACCTCTTGTGTGCTAGACTCTAGTAGAACTACTGCAAATTTATCATGCAACCAAGCTAATATGGATAGATTCATGAGGCAAAAGGGTCCTCGAATGGCAAAGGTAGTTCGAAGGATTAACTGCAACGTTGAGCCTTTAGAATATGGAATCGTGCTCTCAGGGAAGTCTTGGTCAAACAGTCAGGCCATTTTTCCAAAAGGATTTAAGAGCAGGGTCAAGTTTATAAATGTTTTAGATCCGTCAACTTTGTGCTACTATGTTTCTGAAATTCTCGATGCCGGACGGGATGGGCCTCTTTTCATGGTTGTTTTGGAGCATTGTCCAAGTGAGGTATTCGTTCATGTTTCTGCTACCAGATGTTGGGAGTTGGTTAGAGAACGAGTCAATCAGGAAATCGCAAAGCAACATAAGTTGGGTAGAACAAACCTTCCTCCTCTACAGCCTCCTGGGAGCTTAGATGGGTTAGAAATGTTCGGATTTACTTCACCGGCAATTGTGCAGGCCATTGAGGCAATGGATCGAAATCGAGTATGTGGTGCATATTGGGACTCTCGGCCCTATTCTCGGCCTCAAGTACATAGTCCACAACTGTCTCAATCAACAGAAATTAGTCGTAACATGCAAACAACCGAAAGGAATGGGGTTGATCCTAGGCCAGCTGGAGCTGATATAGTACTTAGGGGATTGTTGAAGAAGGCAAACCTAGAAGAACTAAGCTCACTCTATACTCTTTTAAATGATAATAGGCCAACAGTTGATCAAGGCGTGTTAGCTCGACTTCTTAATGAAGAGATTCAAAGTCATCGAAGATGA 3828 41.25 MIIILIKPEENHGKRAFNLLDVVVLDTGSPTYDLVALILSDMGTELIRVCVEDDSDDFPSVPPGFESYISFSLGKVHNLEKQDSHAPVSLPTVSESQPVNVGSEVDVAKVAKVTRSLRRKPCVNYKQYDYCSDDEINSTKCLDQNSSLRPSLSKGVIRGCPQCNNCQKVVARWHPEESCRPNLEDAPVFYPTEEEFGDTLTYIASIREKAEPYGICRIVPPSSWKPPCPLKQKHIWEGSKFVTRVQRIDKLQNRESIRKNSRVCSQMRRKRRRCNRKGVDVTTLNGKNADAGSVEAERFGFDPGPDFTLAMFQKYADDFKSQYFSKPLIDTAKGCNPSMLQDNENWKPSLEAIEGEYWRMVEKPTEEIEVLYGADLETGEFGSGFPKISCQEGSTLDEEKYVKSGWNLNNFPKLPGSVLSYESSNISGVLVPWLYIGMCFSSFCWHVEDHHLYSLNYMHWGDPKVWYGVPGNGAGKLEEAMRKHLPNLFQEQPDLLHKLVTQLSPSILKSEGVPVYRCIQNPGEFVLTFPRAYHSGFNSGFNCAEAVNVAPVDWLPHGQIAVELYREQGRRTTISHDKLLLGAAREAVRAHWELNLLKKNTLDNLRWNSVCGKDGILARAFKTRVEMERARRNLPCSSSQAMKMESNFDASNERECSSCLFDLHLSAVGCRCSPDKYVCLNHTKQLCSCAWEERIFLFRYDISELNILLEALEGKLSAVYRWARQDLGLALSTSRELSSQSSTKSNGNPQWKELLRQSSLLPTLTALNSPHHAKKLSEVTTSFLEVKKVISTVNGSEKEIGLQNHKMEVKKESHDLVATNSRHADSQSCKEDTNALNKIEVKSTMDKMCPENVILLSDDEGDEHKKTISNGLAESSSVKQLGNSDRFTEIDSKASLCNYNENAILHTPATDATTMGDKEVNLLIEKRLNNCQSSIVPLNSKQSQNINFSVRNTANGIQNNTSSDSGLGHSNREFLASTDNDCQKPQTCGYGKLNEGTHGNAGMSATSCVLDSSRTTANLSCNQANMDRFMRQKGPRMAKVVRRINCNVEPLEYGIVLSGKSWSNSQAIFPKGFKSRVKFINVLDPSTLCYYVSEILDAGRDGPLFMVVLEHCPSEVFVHVSATRCWELVRERVNQEIAKQHKLGRTNLPPLQPPGSLDGLEMFGFTSPAIVQAIEAMDRNRVCGAYWDSRPYSRPQVHSPQLSQSTEISRNMQTTERNGVDPRPAGADIVLRGLLKKANLEELSSLYTLLNDNRPTVDQGVLARLLNEEIQSHRR 1275
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 15536076 15546490 + PI0027203.1 Cmetu05g1320 357024

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1320 1275 PANTHER LYSINE-SPECIFIC DEMETHYLASE 179 1178 - -
Cmetu05g1320 1275 Pfam JmjC domain, hydroxylase 433 549 IPR003347 -
Cmetu05g1320 1275 Gene3D - 1048 1184 - -
Cmetu05g1320 1275 ProSiteProfiles JmjN domain profile. 186 227 IPR003349 -
Cmetu05g1320 1275 Pfam jmjN domain 187 220 IPR003349 -
Cmetu05g1320 1275 ProSiteProfiles FYR domain FYRN motif profile. 1040 1098 IPR003888 GO:0005634
Cmetu05g1320 1275 ProSiteProfiles FYR domain FYRC motif profile. 1100 1190 IPR003889 GO:0005634
Cmetu05g1320 1275 SMART JmjN_1 185 226 IPR003349 -
Cmetu05g1320 1275 Pfam C5HC2 zinc finger 656 706 IPR004198 -
Cmetu05g1320 1275 Gene3D Cupin 171 550 - -
Cmetu05g1320 1275 SMART cupin_9 400 566 IPR003347 -
Cmetu05g1320 1275 SMART fyrn_3 1054 1098 IPR003888 GO:0005634
Cmetu05g1320 1275 SUPERFAMILY Clavaminate synthase-like 401 593 - -
Cmetu05g1320 1275 SMART fyrc_3 1104 1198 IPR003889 GO:0005634
Cmetu05g1320 1275 Pfam F/Y rich C-terminus 1102 1186 IPR003889 GO:0005634
Cmetu05g1320 1275 FunFam Putative lysine-specific demethylase JMJ16 1046 1184 - -
Cmetu05g1320 1275 ProSiteProfiles JmjC domain profile. 400 566 IPR003347 -
Cmetu05g1320 1275 Pfam F/Y-rich N-terminus 1055 1095 IPR003888 GO:0005634
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1320 K11446 - - csv:101208186 2421.74
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu01g1940 Cmetu-Chr1:22694329 Cmetu05g1320 Cmetu-Chr5:15536076 2.00E-170 dispersed
Cmetu04g0722 Cmetu-Chr4:32353492 Cmetu05g1320 Cmetu-Chr5:15536076 2.20E-49 dispersed
Cmetu05g1320 Cmetu-Chr5:15536076 Cmetu12g0247 Cmetu-Chr12:8316492 4.20E-191 dispersed
Cmetu05g1320 Cmetu-Chr5:15536076 Cmetu06g2594 Cmetu-Chr6:29888442 9.80E-55 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu05g1320 . 42 1274 JUMONJI Transcription Factor Family AT1G08620 55.0 0.0e+00 1267.7
Cmetu12g0247 . 36 605 JUMONJI Transcription Factor Family AT1G08620 55.7 2.4e-183 640.2
Cmetu12g0247 . 27 587 JUMONJI Transcription Factor Family AT1G30810 61.4 1.5e-202 703.4
Cmetu12g0247 . 32 574 JUMONJI Transcription Factor Family AT2G34880 55.9 8.1e-180 627.9
Cmetu12g0247 . 63 657 JUMONJI Transcription Factor Family AT4G20400 55.2 1.8e-188 656.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004424 1 5 2 2 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7953 PF02373 JmjC 7.00E-45 CL0029 Cmetu TR