Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1372 ATGGACAATCAAGGTAGTGTCAAAGACATGTGGGATCCTCTTATAAACAACTGGAACATCAAGCTGAGAAGGCCTTTGAGGGACCATGAAAGCCATCAGTGGAATGACCTTGTTTGTCTCCTTCCCAGGCCAAACAACAGCAATGAAGCTGACATCCCTATATGGAATCTCAATACAAATCGAAACTTTAGCATTGCATCAGTTAAAAACAACATCTTCCAAACTCATCTTAGGGATGAACATGGTATTGATCAAAATATCTTCAGAAACTTATGGAGATCCAGTATACCACAAAAAGGAAAATTCTTCATATGGTCTCTCATACACAAATGCATAAACACTACTGATATGCTTCAAAGAAGATATCCAAAATGGCTCCTTCAACCAAATAGATGCTCTCTTTGCAAGTCAGAATCTGAAGATATAAATCACTTATTTGTCTCCTGCCCCATCTCTATTTCTCTTTGGTCTCATGTGGATATAATTACTGGCTGGAAAAATTCTGGAAGCTCCATTACTTCTATTTGCCAAAATCTTTGCAGCATCAATCAAAAGAACAAGAAAGGTATCATCACTTTCAATTCTGTGGCTGCTGTTCTTTGGTCTATTTGGCTTGAAAGAAACAACAGAATCTTCAACAACAAAGAGAAAAACTTCTGCAACCTTTGGGAGGACATCAAAGCCTTAGTTGGTTTTTGGACAAGCAGAAACAAGTTGTTCAAAAACTATAATGCTAGTTCTATTGCACTAAATCTCAATGCTTTCATCGGGAGTGATGAAGGTGCTAAGGAGGTGTCCACCTAG 804 38.18 MDNQGSVKDMWDPLINNWNIKLRRPLRDHESHQWNDLVCLLPRPNNSNEADIPIWNLNTNRNFSIASVKNNIFQTHLRDEHGIDQNIFRNLWRSSIPQKGKFFIWSLIHKCINTTDMLQRRYPKWLLQPNRCSLCKSESEDINHLFVSCPISISLWSHVDIITGWKNSGSSITSICQNLCSINQKNKKGIITFNSVAAVLWSIWLERNNRIFNNKEKNFCNLWEDIKALVGFWTSRNKLFKNYNASSIALNLNAFIGSDEGAKEVST 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18770549 18771439 - PI0025329.1 Cmetu05g1372 357076

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1372 267 Pfam zinc-binding in reverse transcriptase 80 156 IPR026960 -
Cmetu05g1372 267 PANTHER REVERSE TRANSCRIPTASE ZINC-BINDING DOMAIN-CONTAINING PROTEIN-RELATED-RELATED 17 233 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1372 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1372 Cmetu-Chr5:18770549 Cmetu12g0339 Cmetu-Chr12:19662597 7.80E-55 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g49 . . Bda06g00973 . . . . . Cmo19g00706 . . . . . Sed04g3899 Cpe04g00098 Cpe15g00565 Bhi05g01785 Tan02g0750 Cmetu05g1372 . Hepe02g0466 . . Cla02g00482 Cam02g0490 Cec02g0491 Cco02g0496 Clacu02g0493 Cmu02g0489 Cre02g0822 . . Cone3ag1205 . . Csa07g00041 . Cme01g01336 . . . . . . . . . . . . Cma19g00697 . Car19g00539 . . . . . . . . . . . . . . . . Lsi11g01141 . Chy01g00740 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000771 0 0 0 0 0 0 0 0 0 0 0 0 0 1 2 0 1 0 0 0 0 0 0 10 7 0 4 0 1 0 26