Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1511 ATGTCGGGTTCTCGACCTCCTAACTCCTCTGGACACCTTCCCGACCAGATCATGCACTCTCTTAAACGCCAACTCCCTTTCTCTTCTATGAAACCACCATTTGCATCTCCTGGGGACTATCACCGCTTCGCTTCGGACTCTCGACTCGCCGATCAAGAACCTGATGCTATCGTAGTCAAATCTCCACAATTGAAGCGGAAGAGTGAGGTAGCAGATTATGAAGCCGAGTCGACTGATAGAGCAATTGGTCCTAGATTTGCTGAGGTAGTTAACAGTCCCCATCAAACACCTGTATCTGTCAAAGGAGGAAAGGGAAGCAAATCAAGGCTTACAAAATGCAGCAGATCAGGGCCACAGACTCCCATGTCAAATGTTGGTTCACCTTCTACAAACAATCTTACTCCAGCTGGTCCATGCCGTTACGATAGTTCACTTGGTCTCTTGACAAAGAAGTTCATTAATCTGATTAAACAAGCGGAAGATGGTATTCTTGATCTAAATAAAGCAGCTGACACGTTGGAGGTACAAAAAAGACGAATATATGATATAACAAATGTCCTTGAGGGAATTGGTCTCATAGAAAAGAAGCTCAAGAACAGAATTCAGTGGAAGGGGCTTGATGTCTCAAGGTCAGGGGATGTTGACGACAATTATGCTGGTCTACAGGCAGAAGTAGAGAACCTTACCATGGAGGAGCGTGGATTAGATGAACAAATAAGAGAGATGCAGGAAAGATTAAGGGACCTCAGTGAAGATGAGAACAACCAAAGGTGGCTTTTTGTAACCGAGGAAGACATCAAGGGTTTACCTTGTTTTCAGAATGAAACTCTTATAGCTATTAAAGCTCCCCATGGAACCACTTTAGAAGTCCCAGATCCTGATGAGGCTGTTGACTACCCCAAAGGAGGTACAGGATAG 918 44.55 MSGSRPPNSSGHLPDQIMHSLKRQLPFSSMKPPFASPGDYHRFASDSRLADQEPDAIVVKSPQLKRKSEVADYEAESTDRAIGPRFAEVVNSPHQTPVSVKGGKGSKSRLTKCSRSGPQTPMSNVGSPSTNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRSGDVDDNYAGLQAEVENLTMEERGLDEQIREMQERLRDLSEDENNQRWLFVTEEDIKGLPCFQNETLIAIKAPHGTTLEVPDPDEAVDYPKGGTG 305
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21381479 21388668 - PI0023829.1 Cmetu05g1511 357215

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1511 305 MobiDBLite consensus disorder prediction 109 135 - -
Cmetu05g1511 305 Coils Coil 218 255 - -
Cmetu05g1511 305 Pfam E2F transcription factor CC-MB domain 221 294 IPR032198 GO:0046983
Cmetu05g1511 305 Coils Coil 156 176 - -
Cmetu05g1511 305 SUPERFAMILY E2F-DP heterodimerization region 217 297 IPR037241 -
Cmetu05g1511 305 MobiDBLite consensus disorder prediction 94 135 - -
Cmetu05g1511 305 Gene3D - 212 300 - -
Cmetu05g1511 305 CDD E2F_DD 216 298 IPR032198 GO:0046983
Cmetu05g1511 305 PANTHER TRANSCRIPTION FACTOR E2F 77 301 IPR015633 GO:0000978|GO:0006357
Cmetu05g1511 305 FunFam E2F transcription factor 1 134 207 - -
Cmetu05g1511 305 Gene3D - 134 207 IPR036388 -
Cmetu05g1511 305 SMART E2F_TDP_2 140 205 IPR003316 GO:0005667|GO:0006355
Cmetu05g1511 305 Pfam E2F/DP family winged-helix DNA-binding domain 142 205 IPR003316 GO:0005667|GO:0006355
Cmetu05g1511 305 SUPERFAMILY Winged helix DNA-binding domain 140 203 IPR036390 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1511 K06620 - - csv:101219318 592.808
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1511 Cmetu-Chr5:21381479 Cmetu08g1984 Cmetu-Chr8:17838097 1.80E-87 dispersed
Cmetu05g1511 Cmetu-Chr5:21381479 Cmetu02g0961 Cmetu-Chr2:24031801 2.00E-09 transposed
Cmetu05g1511 Cmetu-Chr5:21381479 Cmetu12g1244 Cmetu-Chr12:2268870 2.00E-09 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu07g0594 . 81 285 E2F-DP Transcription Factor Family AT5G02470 55.1 1.0e-60 230.7
Cmetu05g1511 . 20 301 E2F-DP Transcription Factor Family AT5G22220 65.6 8.8e-86 314.7
Cmetu03g0122 . 153 342 E2F-DP Transcription Factor Family AT5G22220 57.9 1.6e-55 214.2
Cmetu08g1984 . 11 448 E2F-DP Transcription Factor Family AT2G36010 52.8 4.8e-111 398.7
Cmetu05g1511 . 21 301 E2F-DP Transcription Factor Family AT2G36010 59.5 1.2e-85 314.3
Cmetu03g0122 . 149 403 E2F-DP Transcription Factor Family AT1G47870 52.9 3.3e-65 246.1
Cmetu05g1511 . 87 295 E2F-DP Transcription Factor Family AT1G47870 53.1 2.5e-49 193.4
Cmetu12g1244 . 3 379 E2F-DP Transcription Factor Family AT3G48160 55.7 5.6e-105 378.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004238 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 1 2 2 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7964 PF16421 E2F_CC-MB 8.30E-26 No_clan Cmetu TF