Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1548 ATGTTCACATTGGTGACTGTGAGATGTGGGCATTGTTCAAATCTGCTTTCTGTAAACATGGGAGCTTCTCTTCAAGTTGTTCCTCCTCAAGATTCTCAACAGGGTCATAAACAACAGCAGGTGAATGCTGGGGATTCAAGTAAGGACAGAGCTTCTTCTTCTTCTTCTACTAAATCCACCAAAATTGGTTCTCTTGATTCTTCTGCTGAACGTGACCAACATAGAATCCCTCCTATTCGCCCACCAGAGAAAAGACAGCGTGTTCCATCGGCGTATAATAGGTTCATAAAAGAGGAAATCCAAAGGATTAAGGCTAAAAATCCTGACATAAGCCACAGAGAAGCCTTTAGCACAGCAGCTAAAAATTGGGCACATTTTCCTCACATCCACTTTGGGCTGAAATGGGATGGAAATAAGCAAACAAAATAA 429 41.72 MFTLVTVRCGHCSNLLSVNMGASLQVVPPQDSQQGHKQQQVNAGDSSKDRASSSSSTKSTKIGSLDSSAERDQHRIPPIRPPEKRQRVPSAYNRFIKEEIQRIKAKNPDISHREAFSTAAKNWAHFPHIHFGLKWDGNKQTK 142
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 21541883 21548261 - PI0009532.2 Cmetu05g1548 357252

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1548 142 MobiDBLite consensus disorder prediction 27 90 - -
Cmetu05g1548 142 Pfam YABBY protein 1 133 IPR006780 GO:0007275
Cmetu05g1548 142 MobiDBLite consensus disorder prediction 27 64 - -
Cmetu05g1548 142 Gene3D High mobility group box domain 68 128 IPR036910 -
Cmetu05g1548 142 FunFam axial regulator YABBY 5-like 71 129 - -
Cmetu05g1548 142 SUPERFAMILY HMG-box 78 126 IPR036910 -
Cmetu05g1548 142 PANTHER PROTEIN YABBY 6-RELATED 1 141 IPR006780 GO:0007275
Cmetu05g1548 142 CDD HMG-box_SF 87 123 - -
Cmetu05g1548 142 MobiDBLite consensus disorder prediction 65 82 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1548 K25796 - - csv:101222154 271.166
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1548 Cmetu-Chr5:21541883 Cmetu09g0297 Cmetu-Chr9:2927555 2.10E-30 dispersed
Cmetu05g1548 Cmetu-Chr5:21541883 Cmetu05g1829 Cmetu-Chr5:1310328 5.80E-33 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cmetu10g1095 . 3 172 C2C2-YABBY Transcription Factor Family AT1G69180 55.7 1.5e-44 176.4
Cmetu09g0297 . 88 248 C2C2-YABBY Transcription Factor Family AT2G45190 59.2 6.2e-42 167.5
Cmetu05g1548 . 1 142 C2C2-YABBY Transcription Factor Family AT1G08465 65.3 3.3e-44 175.3
Cmetu02g0863 . 6 170 C2C2-YABBY Transcription Factor Family AT1G08465 55.9 1.3e-43 173.3
Cmetu09g0297 . 44 238 C2C2-YABBY Transcription Factor Family AT1G08465 52.3 1.6e-43 172.9
Cmetu06g2212 . 21 185 C2C2-YABBY Transcription Factor Family AT1G08465 51.5 1.6e-38 156.4
Cmetu09g0297 . 55 247 C2C2-YABBY Transcription Factor Family AT4G00180 55.7 1.0e-49 193.7
Cmetu10g0308 . 1 164 C2C2-YABBY Transcription Factor Family AT1G23420 55.7 4.4e-42 168.7
Cmetu02g0863 . 8 176 C2C2-YABBY Transcription Factor Family AT2G26580 68.0 2.5e-59 225.3
Cmetu05g1829 . 8 159 C2C2-YABBY Transcription Factor Family AT2G26580 72.3 4.2e-59 224.6
Cmetu09g0297 . 46 209 C2C2-YABBY Transcription Factor Family AT2G26580 54.8 1.7e-44 176.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004363 1 4 0 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 2 1 1 1 1 1 1 2 2 41
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
7967 PF04690 YABBY 7.20E-57 CL0114 Cmetu TF