Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1570 ATGGGGCAGCAACCATCCAAAGATGAGCTTGTCTATCAGCGTGCTAGCAACGGCGATGTTGAAGGGATTAAAGCCCTTGCAGCAGAAGGAACCGGCCTTGAGTGGGTTGATAGGGAAGGAAAGACTCCATTGATTGTTGCCTGTACGAAACCAGAGCCTTATAACGTGGCGAAAACGTTACTAGAACTTGGCGCCAATGTCAATGCGTTTGCACCAGGCCGTAATGGTGGAACGCCGTTGCATCATGCAGCTAAAAGAGGATTGGAAAATACTGTTAAATTACTTCTTTCTTACAGAGCAAATACTTCGATAATTAATGATGGTTGCCAAACTGCATTGGAAGTTGCCAGAGCAGCAGGGCACAAGAATGTTGTTCGTGCCATTGAGAATCATATTTGTTTATTCTCTGGTTGGATGCGGGAATTTTATGGGCCGGAGTTTCTTGAAGTACTAGCTCCTCATCTCCTTTCACGGAAAGTTTGGGTAGTCATTTTACCTTGTGGTTCTCGAAATCCTATGAAGCCTACTAAGTTGGAGCTCGCCATTTATGCTAGCTTGCAGGATGCCCAGCCTCGTCTAGTTATTCCATTGTGGAAATCATATTTAGAGGAACATAAGATACATGAATCTGATCCTTCTGTTGTCGTTGTCGACAACACTCCAAACCTAGCCCCAAGAGGAGGGAGGAGGCGAAGACGGAGTTGTCACACCTCCTGGGAAGCCAGATGTCGATTTCGAAAATCAAAGACTGGACGCCTTAGACTTGCACCTGCTAATGAGTACGACAGACAACAACTTCAATGGTTTTGTGATGCTTGCAAAGGGATTCCTCAGCCAAAGGCGATGCAATCTACAGCCTCGCAGAATCACCAGAGCCCGATCAACATTGCGACCATACCTCCCGGTGCTGAAGATCCGGAGCTCGTGATGGCCATAAATGCCTCTATTCAGTCAGCTATGCAGGAAAGAGGACAGCTTCATCATAATCCCCATTCATCAAGTTCTGAAGCAGGTGCCTCCAGTAGCAGTGCATTACCTCAACCTGCTCCTCCTAAAACAAGTTCTAGCAAATGGACAGTGCACGAAGCCAGCCACAGTTATAGTCCAAGCCATGGTGTTTGCGAGGAAACACCAAATGATCCTGTCCCTGTCATCCAGATTATGCATCCTCCAAATGCAGTCCCCACAGCTCCACCTGTGGCAGCCAAAACTTTTGAGGCTAGCACAAGCACAGTTGACTACACGTTGGTCGATTCTGACCCCATAAACGTTGTACCATCTTCATCTGTTGGGAACGAAGGGAAACAAGGTAACGGCAACTCGACTTGTGTGATATGTTTGGATTCTCCAGTAGAGGGAGCTTGTGTCCCCTGCGGCCATATGGCTGGATGTATGTCTTGTCTAAATGAGATCAAAGCCAAGAATTGGGGCTGCCCAGTTTGTCGCACCAAGATCAATCAAGTCATAAAGTTGTATGTGGTATGA 1485 47.0 MGQQPSKDELVYQRASNGDVEGIKALAAEGTGLEWVDREGKTPLIVACTKPEPYNVAKTLLELGANVNAFAPGRNGGTPLHHAAKRGLENTVKLLLSYRANTSIINDGCQTALEVARAAGHKNVVRAIENHICLFSGWMREFYGPEFLEVLAPHLLSRKVWVVILPCGSRNPMKPTKLELAIYASLQDAQPRLVIPLWKSYLEEHKIHESDPSVVVVDNTPNLAPRGGRRRRRSCHTSWEARCRFRKSKTGRLRLAPANEYDRQQLQWFCDACKGIPQPKAMQSTASQNHQSPINIATIPPGAEDPELVMAINASIQSAMQERGQLHHNPHSSSSEAGASSSSALPQPAPPKTSSSKWTVHEASHSYSPSHGVCEETPNDPVPVIQIMHPPNAVPTAPPVAAKTFEASTSTVDYTLVDSDPINVVPSSSVGNEGKQGNGNSTCVICLDSPVEGACVPCGHMAGCMSCLNEIKAKNWGCPVCRTKINQVIKLYVV 494
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18162790 18167627 + PI0028301.1 Cmetu05g1570 357274

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1570 494 MobiDBLite consensus disorder prediction 321 373 - -
Cmetu05g1570 494 Pfam Ankyrin repeats (many copies) 42 96 IPR002110 GO:0005515
Cmetu05g1570 494 ProSiteProfiles Ankyrin repeat region circular profile. 75 107 - -
Cmetu05g1570 494 Pfam Zinc finger, C3HC4 type (RING finger) 441 488 - -
Cmetu05g1570 494 ProSiteProfiles Zinc finger RING-type profile. 443 482 IPR001841 -
Cmetu05g1570 494 PANTHER ROLLING PEBBLES, ISOFORM B 435 491 - -
Cmetu05g1570 494 SMART ANK_2a 75 104 IPR002110 GO:0005515
Cmetu05g1570 494 SMART ANK_2a 39 69 IPR002110 GO:0005515
Cmetu05g1570 494 MobiDBLite consensus disorder prediction 281 302 - -
Cmetu05g1570 494 ProSiteProfiles Ankyrin repeat profile. 75 107 IPR002110 GO:0005515
Cmetu05g1570 494 ProSiteProfiles Ankyrin repeat region circular profile. 39 69 - -
Cmetu05g1570 494 ProSiteProfiles Ankyrin repeat profile. 39 72 IPR002110 GO:0005515
Cmetu05g1570 494 SMART ring_2 443 481 IPR001841 -
Cmetu05g1570 494 SUPERFAMILY Ankyrin repeat 12 133 IPR036770 -
Cmetu05g1570 494 SUPERFAMILY RING/U-box 438 488 - -
Cmetu05g1570 494 CDD RING-HC_XBAT35-like 440 492 - -
Cmetu05g1570 494 MobiDBLite consensus disorder prediction 321 381 - -
Cmetu05g1570 494 MobiDBLite consensus disorder prediction 281 296 - -
Cmetu05g1570 494 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 427 494 IPR013083 -
Cmetu05g1570 494 Gene3D - 80 130 IPR036770 -
Cmetu05g1570 494 Gene3D - 3 79 IPR036770 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1570 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1570 Cmetu-Chr5:18162790 Cmetu01g1181 Cmetu-Chr1:24181084 9.50E-06 dispersed
Cmetu05g1570 Cmetu-Chr5:18162790 Cmetu06g2092 Cmetu-Chr6:3298693 5.90E-141 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g332 . . . . . Bpe12g00164 . . . . Cma02g00314 . Car02g00195 Car20g00595 Sed01g0615 . . Bhi05g01518 Tan02g0522 Cmetu05g1570 Lac12g0422 Hepe02g0332 . . Cla02g00315 Cam02g0322 Cec02g0323 Cco02g0325 Clacu02g0314 Cmu02g0313 Cre02g0645 Cone12ag1280 Cone8ag1351 Cone3ag1265 . . Csa07g00229 . . Blo04g00617 Blo13g00584 . . Bpe15g00922 . Bma03g00654 Bma08g00700 . Cmo02g00308 . . . . . . Cpe05g01326 . . . . . . . Cla02g01042 . . . . . . Lsi11g01322 . Chy01g00551 Cme11g01009
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002162 2 4 2 1 1 2 3 2 2 2 2 2 3 2 2 3 2 2 1 2 2 2 2 2 2 2 2 3 2 2 63