Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1606 ATGAGCACGCATAGTTGCTCAAAACAGTACAGTAGAAGGAGTAAAAAGCAGACCCGGAGCTATTCTGATGATGAAACTGCAGCTCGGACTAGGCCATTCAGCTTTGAAGATATTATGCTTAGAAGGAAGACTAAAGAGTCAGCTGCTATGGTTGAGGCGGATGCCACAAGTACTGATAATCGGGCATCTGAAAGACATTTTCGTCACAGTAAAGGTTCTTCTCTTGATGTGCAAAATCTCTCATTGGAGGAATCAGCCAAAGATAGTTCAAGAAGGAAAAAAGAGGAGACAGTGTCGAAGAACAATATGGTGGTTAGGAGTGATAGAAATAATTACGAATCTGGATTGTCACTGATGAGTAAACTTAAACATGACAGGAATGAAAAGGATGAAAGACAGAAATATGGCCAGGAAAATCTTGGTTGGGGAAAAAATGACCAGAGTTACAGTAAGAGAAAATCTCAAAATGCTGATGATGAAAGCAACAAAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGATAGTAAGAGAAAATCTCAAAATGGCAATGATGACAGGAATAGAGATAGTAAGAGAAAATCTCAAAATGGCGACGATGACAGGAATAGAGATAGTAAGAGAAAATCTCAAAATGGCAACGGTGACAGGAATAGAGACAGTAAGAGAAGATCTCAAAATGGTGATGATGAAAGGAACGGAGACAGTAAGAGAAAATCTCAAAATGGTGATGATGACAGGAATAGAGACAGTAAGAGAAAATCTCAAAACGGTGATGATGACAGGAATAGAGACAAGTACATTGCAAAGAGATATGATCATGGTAAACACCATGACCTAGAAAATAGAGAAAGAAAGGAAGCTATAGTATCACTGACTTCACGTTATGAAGATTCTAGATTGAAAAGAAGACAGAAAAGAAGCCCAGATCGTGAAAGTAAACATAGAAGATCTGTTTCACTTTCTCCAAGGCCACACAAGCACTCAACTAAGTTAGCTAGGCAGAAGGAGTTGCCATTAGAGTCTCATGTGAAGAAGTCTGGGAAATGGCGTTCTGATAGTGATAGAACAGGGGATTTTACCAACACTTCCAATAGCCAATACCGGCGGCATTCTGGGTCAACTAGTGGGCTTGGTGGCTATTCACCTAGAAAGAGAAGAACTGAATCTGCTGTCAAGACTCCTTCACCTCTTCGATCACCAGAGAAGAAAAATGAAGTGTTGGATCTTCCTCCAACAGAAAAGGTTGGATTATTTTCTGGCTCAGTTGCTTCCAACTTCCCACAGTCAAATCCTACTGTTTCATTGGGCATTAGTAATGATCAATCTGGCGGTGCGTTCTTTTCTTCTGCTATGGGGAAATCTTTATCAGTGGTTTCTTCAAATAATATAGCAATGAAGACAAAGGTTTCTCTTGATTTAGTTCAGCTGACCCAAGCTACTCGGCCAATGAGGAGGCTTTATATCGAAAACTTACCACATTCTGCATCTGAGAAAGCAATCATTGATTGCCTGAATGGTTTTCTCATGTCTTCAGGTGTTAATCACATTGAAGGAACCCAGCCATGTATTAGTTGTATTATACACAAAGATAGGGGTCAAGCTCTTGTTGAATTTCTGACACCTGAGGATGCATCGGCAGCTCTTTTGTTTGACGGAAGTAACTTCTCTGGCTCCATTCTAAAGATTCGGCGACCAAAAGATTATATCGAAACTGTAACTGGTGACCTGGACAAGTCGGTGCCGGTGGTAAATAAAATAAGTGATGTTGTTGAGGACTCACCAAATAAGATTATCGTTGCTGGGATCTCAAATAGATTATCATCCGAAATGCTTAGGGATATTGTTACTGCATTTGGACGATTGAAGGCCTATCACTTTGAGATGAACGATGGTCTTAATGAACCTTGTGCCTTTTTGGAGTATGTTGACGAATCGGTTGTGTCCAAAGCTTGTGCTGGTCTGAATGGTATGAAGATTGGAGGGCAAGTAATAAAAGTGTTCCCAGCTGTTCCTTTTCCATCAATGGAACGTACTGGATGTCACCATGTTATGGGATCCCAGAGCATGTAA 2085 40.34 MSTHSCSKQYSRRSKKQTRSYSDDETAARTRPFSFEDIMLRRKTKESAAMVEADATSTDNRASERHFRHSKGSSLDVQNLSLEESAKDSSRRKKEETVSKNNMVVRSDRNNYESGLSLMSKLKHDRNEKDERQKYGQENLGWGKNDQSYSKRKSQNADDESNKDSKRKSQNGDDDRNRDSKRKSQNGNDDRNRDSKRKSQNGDDDRNRDSKRKSQNGNGDRNRDSKRRSQNGDDERNGDSKRKSQNGDDDRNRDSKRKSQNGDDDRNRDKYIAKRYDHGKHHDLENRERKEAIVSLTSRYEDSRLKRRQKRSPDRESKHRRSVSLSPRPHKHSTKLARQKELPLESHVKKSGKWRSDSDRTGDFTNTSNSQYRRHSGSTSGLGGYSPRKRRTESAVKTPSPLRSPEKKNEVLDLPPTEKVGLFSGSVASNFPQSNPTVSLGISNDQSGGAFFSSAMGKSLSVVSSNNIAMKTKVSLDLVQLTQATRPMRRLYIENLPHSASEKAIIDCLNGFLMSSGVNHIEGTQPCISCIIHKDRGQALVEFLTPEDASAALLFDGSNFSGSILKIRRPKDYIETVTGDLDKSVPVVNKISDVVEDSPNKIIVAGISNRLSSEMLRDIVTAFGRLKAYHFEMNDGLNEPCAFLEYVDESVVSKACAGLNGMKIGGQVIKVFPAVPFPSMERTGCHHVMGSQSM 694
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 18017449 18027743 + PI0029158.1 Cmetu05g1606 357310

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 16 49 - -
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 151 323 - -
Cmetu05g1606 694 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 600 676 IPR000504 GO:0003723
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 336 360 - -
Cmetu05g1606 694 PANTHER RNA-BINDING PROTEIN 225 676 - -
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 1 413 - -
Cmetu05g1606 694 SUPERFAMILY RNA-binding domain, RBD 593 681 IPR035979 GO:0003676
Cmetu05g1606 694 SMART rrm1_1 601 672 IPR000504 GO:0003723
Cmetu05g1606 694 SMART rrm1_1 490 568 IPR000504 GO:0003723
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 58 72 - -
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 361 385 - -
Cmetu05g1606 694 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 602 670 IPR000504 GO:0003723
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 119 137 - -
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 103 117 - -
Cmetu05g1606 694 SUPERFAMILY RNA-binding domain, RBD 475 572 IPR035979 GO:0003676
Cmetu05g1606 694 MobiDBLite consensus disorder prediction 85 102 - -
Cmetu05g1606 694 Gene3D - 591 649 IPR012677 -
Cmetu05g1606 694 FunFam Splicing factor U2af large subunit A 489 592 - -
Cmetu05g1606 694 Gene3D - 489 671 IPR012677 -
Cmetu05g1606 694 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 489 572 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1606 K12837 - - csv:101213128 1022.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1606 Cmetu-Chr5:18017449 Cmetu03g1032 Cmetu-Chr3:14758437 2.80E-19 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g750 Blo01g00297 . . . . . . Bma05g01247 Cmo08g01045 Cmo17g00150 . . . . . . . . . . . . . . Cla06g00680 Cam06g0733 Cec06g0740 Cco06g0749 Clacu06g0725 Cmu06g0709 Cre06g1483 . . . . . Csa02g01043 Chy05g00306 . . . . . Bpe05g01101 . . . Sed04g2009 . . Cma08g01072 Cma17g00150 Car08g00945 Car17g00132 Cpe12g00127 Cpe17g00206 Bhi12g01590 Tan06g2386 Cmetu05g1606 . . . Lcy13g0392 . . . . . . . Lsi09g01218 . . Cme05g00588