Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cmetu05g1641 ATGATATGTATGAGCTACAAAAAGTTAGCCGAGGATGTAAAGCCAGGGAGCGTAATACTTTGCTCGGATGGTACAATCTCATTTTCAGTTCTATCTTGTGACAAAAAATTGGGTTTGGTACGATGTCGCTGTGAGAACTCTGCAGTTCTTGGTGAAAGGAAAAATGTTAACCTGCCTGGAGTTATAGTGGATCTCCCTACCCTTACAGAAAAAGATAAGGAAGATATACTAGAATGGGGGGTTCCTAATAAGATTGATATGATTGCTTTATCTTTTGTTCGTAAAGGTTCTGATCTTGTGGAGGTCCGGAAGTTGCTTGGAAAGCATGCCAAGAGTATTCTTCTCATGTCAAAGGTTGAGAATCAAGAAGGTGTGGCAAATTTTGACGACATACTAGCCAATTCAGATGCATTCATGGTGGCACGGGGTGACTTGGGAATGGAAATTCCAATTGAGAAGATATTTTTGGCGCAGAAAGTGATGATATACAAGTGCAACATCCAGGGAAAACCTGTTGTCACAGCGACACAGATGCTGGAATCAATGATTAAATCTCCTAGGCCAACTAGAGCCGAAGCCACTGATGTTGCAAATGCTGTTCTTGATGGGACAGACTGCGTAATGTTAAGTGGTGAAACGGCTGCTGGAGCATATCCTGAACTTGCTGTTAGAACAATGGCAAAAATATGTGTTGAAGCTGAAAGCACCCTTGATTATGGTGATGTCTTTAAAAGAATTATGGAACATTCACCAGTTCCCATGAGCCCATTAGAAAGCCTGGCTTCTTCTGCTGTTAGGACTGCAAACTCAGCCAAGGCAGCTCTTATACTTGTCCTAACTAGAGGAGGAAGCACAGCAAAATTGGTGGCCAAGTATAGGCCAGGAACGCCGATCTTGTCTGTAGTTGTTCCCGAGATTAAGACAGATTCATTTGATTGGTCGTGCAGTGATGAAGCTCCAGCAAGGCATAGCTTAATCTTTCGGGGCTTGGTACCGGTTCTTAGCACAGCCTCAGCAAGGTCGTCTCATGCAGAGACAACTGAAGAAGCAATAGAGTTTGCTATTCAGCATGCAAAGTCCAAGGCCTCTGTAAAAATGGAGATTCTGTAG 1110 43.24 MICMSYKKLAEDVKPGSVILCSDGTISFSVLSCDKKLGLVRCRCENSAVLGERKNVNLPGVIVDLPTLTEKDKEDILEWGVPNKIDMIALSFVRKGSDLVEVRKLLGKHAKSILLMSKVENQEGVANFDDILANSDAFMVARGDLGMEIPIEKIFLAQKVMIYKCNIQGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGETAAGAYPELAVRTMAKICVEAESTLDYGDVFKRIMEHSPVPMSPLESLASSAVRTANSAKAALILVLTRGGSTAKLVAKYRPGTPILSVVVPEIKTDSFDWSCSDEAPARHSLIFRGLVPVLSTASARSSHAETTEEAIEFAIQHAKSKASVKMEIL 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
5 23044724 23049082 + PI0006791.1 Cmetu05g1641 357345

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 115 141 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 142 166 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 85 99 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 167 191 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 192 210 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 PRINTS Pyruvate kinase family signature 211 227 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 FunFam Pyruvate kinase 1 66 - -
Cmetu05g1641 369 NCBIfam pyruvate kinase 3 302 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 Pfam Pyruvate kinase, alpha/beta domain 258 365 IPR015795 -
Cmetu05g1641 369 SUPERFAMILY Phosphoenolpyruvate/pyruvate domain 54 240 IPR015813 GO:0003824
Cmetu05g1641 369 FunFam Pyruvate kinase 234 367 - -
Cmetu05g1641 369 Gene3D - 234 365 IPR036918 -
Cmetu05g1641 369 PANTHER PYRUVATE KINASE 3 365 IPR001697 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 SUPERFAMILY PK C-terminal domain-like 222 364 IPR036918 -
Cmetu05g1641 369 Gene3D - 67 233 IPR040442 -
Cmetu05g1641 369 FunFam Pyruvate kinase 44 233 - -
Cmetu05g1641 369 Pfam Pyruvate kinase, barrel domain 1 241 IPR015793 GO:0000287|GO:0004743|GO:0006096|GO:0030955
Cmetu05g1641 369 Gene3D - 2 66 IPR015806 GO:0004743|GO:0006096
Cmetu05g1641 369 ProSitePatterns Pyruvate kinase active site signature. 113 125 IPR018209 GO:0004743|GO:0006096
Cmetu05g1641 369 SUPERFAMILY PK beta-barrel domain-like 2 65 IPR011037 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cmetu05g1641 K00873 - - csv:101216029 694.501
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cmetu05g1641 Cmetu-Chr5:23044724 Cmetu10g0537 Cmetu-Chr10:17056685 5.60E-160 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi6g13 . . . . . . Bma14g00739 Bma07g01367 . . . . . . . Cpe05g00567 . . . . . . . . Cla02g02367 Cam02g2518 Cec02g2565 Cco02g2594 Clacu02g2492 Cmu02g2423 Cre02g2741 . Cone5ag1304 Cone18ag0007 Cone11ag1586 . . Chy05g00007 Cme05g00009 . . Bda07g00775 Bda09g00342 . Bpe11g00949 . . Sed01g3428 Cmo02g01195 Cmo20g00006 Cma02g01161 Cma20g00006 Car02g00961 Car20g00004 Cpe16g00942 . Bhi10g00488 Tan07g0564 Cmetu05g1641 . Hepe08g0007 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001167 5 3 3 5 4 2 3 2 2 2 2 2 3 2 2 3 2 4 3 2 2 2 2 1 2 2 2 3 2 4 78